PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01396-snap-gene-0.27-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 238aa    MW: 26758.1 Da    PI: 5.387
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01396-snap-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding377.8e-122969345
                                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                                               +++ eE+   +++ +q+ ++ W++Ia +++ gRt++++k++w+
  maker-scaffold01396-snap-gene-0.27-mRNA-1 29 KFSVEEERVVIELQAQFWNK-WARIATYLP-GRTDNDVKNFWN 69
                                               799*****************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1082276IPR017930Myb domain
SMARTSM007178.1E-102674IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-152971IPR009057Homeodomain-like
PfamPF002493.6E-102970IPR001005SANT/Myb domain
CDDcd001674.24E-102969No hitNo description
SuperFamilySSF466891.4E-102979IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVQETGAPFD PKASCSRPKS RAAFVGGCKF SVEEERVVIE LQAQFWNKWA RIATYLPGRT  60
DNDVKNFWNS RQKRLARILQ TSGMANEPQK NKRAVQTCHD VPASQLNAQS ASSSCIENYE  120
MIKMVPLTDL LNLKLVYFEK DLAHHELSQD KKNSCTNQEL LAKLEDPNIF NMFGTLDACE  180
LGNGAQLPIG AQLFEPVGSC RSDAKENIDN PITPNNFFND FPTDVSDHIE PYQSPSER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4640599e-52AM464059.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X130291.4, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889968.11e-127transcription factor DUO1-like
TrEMBLA0A2I4HDS45e-93A0A2I4HDS4_JUGRE; transcription factor MYB59 isoform X2
STRINGcassava4.1_022856m9e-65(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36933164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-33MYB family protein