PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01400-augustus-gene-0.25-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 521aa    MW: 58053.8 Da    PI: 6.688
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01400-augustus-gene-0.25-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10471518347
                                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                                    rW+  E++ l  +v+++G+g+Wk+I +        Rt+ ++k++w++ 
  maker-scaffold01400-augustus-gene-0.25-mRNA-1 471 RWSLLEEDTLRTGVQKYGKGNWKLILNSYRdifDERTEVDLKDKWRNM 518
                                                    9********************************99***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.266466521IPR017930Myb domain
SMARTSM007173.3E-7468521IPR001005SANT/Myb domain
CDDcd116603.21E-18470520No hitNo description
PfamPF002494.5E-9471518IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-14471520IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-11471520IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MFTVDPDICR WISEFLMRST AQDHVIKKLL QVLPVSGADS RFKKTVLLRT IRSEIADASV  60
SETTLQTLEL IEEMDRSEGV EIRDSLKAAY CAVAVECTVK YLLGSPDKHG EYFEAVKRVW  120
RGRIGILEKS GKSELVTDEL TRWRDDLEEA LWEANTAKRL MKLNTRTEAL RALRVFLGEA  180
WALMGPSFLE SAAALLGPSD LQNLSGDQMP ANNASGLAAA TVEAAEPAAV AVDSSNVGEL  240
GVEEEVGATH REPTVNGEGS REMGVNDKPA GRGKEIHKGD VLPRCKHVTW HKRSKGGVRI  300
TEEVDTDASP SKYDSLPTPE VNMIKEALKS SSLELQAVVK DPLPDALHLS ETIIADMVKK  360
RKIHEPSVEN QSEKDTDALN PSVEKSIAAQ TTDSGCGNQS CIPQSNATRP SLMERNGTAH  420
TYEWDDSIDG SPGGMTNRTG RLHLPSPKRK IVSPLKKYEV TKFVRRRRLK RWSLLEEDTL  480
RTGVQKYGKG NWKLILNSYR DIFDERTEVD LKDKWRNMTR Y
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447467KRKIVSPLKKYEVTKFVRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913428.10.0uncharacterized protein LOC112025000 isoform X2
TrEMBLA0A2N9FZU70.0A0A2N9FZU7_FAGSY; Uncharacterized protein
STRINGVIT_06s0004g08050.t011e-162(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-24TRF-like 5