PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01425-augustus-gene-0.41-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 186aa    MW: 21099.9 Da    PI: 10.276
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01425-augustus-gene-0.41-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.71e-32107165159
                                                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                                    ldDgy+WrKYGqK vk+s++prsYYrCt+ +C+vkk+++r ++d ++v++tYeg Hnh+
  maker-scaffold01425-augustus-gene-0.41-mRNA-1 107 LDDGYRWRKYGQKAVKNSNHPRSYYRCTQLTCNVKKQIQRLSKDSSIVVTTYEGIHNHP 165
                                                    59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-3294166IPR003657WRKY domain
PROSITE profilePS5081128.3102167IPR003657WRKY domain
SuperFamilySSF1182904.18E-28103166IPR003657WRKY domain
SMARTSM007749.4E-38107166IPR003657WRKY domain
PfamPF031061.3E-25108165IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDEVPLVPLT LNNIQALTCS LPSTSLHQPR QETIDQIASD IDWVSFFAAS PFIFGNQKPS  60
STSQSLTAEN GRRGELNGTK NKGKASRTKK VHPSRIAFHT RSIDDILDDG YRWRKYGQKA  120
VKNSNHPRSY YRCTQLTCNV KKQIQRLSKD SSIVVTTYEG IHNHPSEKLM ESLSPLLRQL  180
QFLSRI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-2694164171WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023870409.11e-126probable WRKY transcription factor 43
SwissprotQ8VWQ41e-56WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A2I4FC671e-79A0A2I4FC67_JUGRE; probable WRKY transcription factor 43
STRINGXP_010261390.12e-67(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.15e-59WRKY DNA-binding protein 56