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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | maker-scaffold01502-snap-gene-0.37-mRNA-1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 94aa MW: 10866.3 Da PI: 8.1178 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 27.8 | 8.2e-09 | 20 | 60 | 49 | 90 |
FAR1 49 ekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+ ++ ++ trtgC a+++ + d++w v ++ HnHe+a
maker-scaffold01502-snap-gene-0.37-mRNA-1 20 NAKKFNHLDTRTGCCARIRFDVK-DDVWTVVLFNDTHNHEFA 60
567789999************99.9***************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 3.0E-6 | 19 | 60 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 94 aa Download sequence Send to blast |
MDLSRTAPDV IEEEFEDPVN AKKFNHLDTR TGCCARIRFD VKDDVWTVVL FNDTHNHEFA 60 SPEQKLNLRS GRKQRGHAHA HVCQRKLMVP IKLG |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023875445.1 | 6e-35 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_023919402.1 | 6e-35 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A2N9F5N9 | 2e-29 | A0A2N9F5N9_FAGSY; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3607 | 9 | 38 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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