PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01553-augustus-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 309aa    MW: 34675.2 Da    PI: 8.0365
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01553-augustus-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-141458144
                                                   TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHH CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrw 44
                                                   +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw
  maker-scaffold01553-augustus-gene-0.30-mRNA-1 14 KGPWSPEEDAKLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRW 58
                                                   79******************************************* PP
2Myb_DNA-binding22.23.3e-0759802446
                                                   HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqk 46
                                                   W+ Ia+ ++ gRt++++k++w++
  maker-scaffold01553-augustus-gene-0.30-mRNA-1 59 WSIIAAQLP-GRTDNDIKNYWNT 80
                                                   99*******.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.295986IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-161258IPR009057Homeodomain-like
SMARTSM007172.4E-131384IPR001005SANT/Myb domain
PfamPF002491.3E-131458IPR001005SANT/Myb domain
SuperFamilySSF466894.6E-181483IPR009057Homeodomain-like
CDDcd001672.26E-101682No hitNo description
Gene3DG3DSA:1.10.10.601.4E-105986IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWWS  60
IIAAQLPGRT DNDIKNYWNT RLKKKLLGKQ RKEQQARRGT NSLKQEMKRG VEMVSDNSNN  120
QNPYWPELPV LAPIPFSNQE PRFNDHASIR KFLIKLGGRF SGIDVPIHDG TSSLQFTNAI  180
SSTTQQIYEH SMINNIPSSA PIDAVLNNTG NIQVAQAQSY MEGVELNMLQ GQSCFPGELE  240
EIVYNNPQGL DGLEFLCGED MVYNRIGSTS TSSESVGWGE MNSLIYPPVA SNYEGMLQRT  300
QRECVFEEL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9702620.0JF970262.1 Quercus suber R2R3-MYB transcription factor MYB1.1 (MYB1) mRNA, complete cds, alternatively spliced.
GenBankJF9702630.0JF970263.1 Quercus suber R2R3-MYB transcription factor MYB1.2 (MYB1) mRNA, complete cds, alternatively spliced.
GenBankJN0036280.0JN003628.1 Quercus suber R2R3-MYB transcription factor (MYB1) gene, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023878050.10.0transcription factor RAX3-like isoform X2
RefseqXP_023884860.10.0transcription factor RAX3-like isoform X2
SwissprotQ9M2Y99e-56RAX3_ARATH; Transcription factor RAX3
TrEMBLJ7FAJ60.0J7FAJ6_QUESU; R2R3-MYB transcription factor MYB1.2
STRINGcassava4.1_011054m1e-140(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.18e-49myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]