PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01555-augustus-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 234aa    MW: 26977 Da    PI: 8.5832
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01555-augustus-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1969122255
                                                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                                       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                                    rk+ ++tkeq + Lee F++n++++ +++e LA++l+L  rqV vWFqNrRa++
  maker-scaffold01555-augustus-gene-0.23-mRNA-1  69 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARH 122
                                                    78889***********************************************95 PP
2HD-ZIP_I/II109.72.1e-3569163189
                                    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARt......ktkq 58 
                                                    +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR+      k+kq
  maker-scaffold01555-augustus-gene-0.23-mRNA-1  69 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARHcglnrsKLKQ 132
                                                    69**************************************************744444449*** PP

                                    HD-ZIP_I/II  59 lEkdyeaLkraydalkeenerLekeveeLre 89 
                                                    +E+++e+Lkr++ +l+e+n+rL++eveeLr+
  maker-scaffold01555-augustus-gene-0.23-mRNA-1 133 TEMECEYLKRWFGSLTEQNRRLQREVEELRA 163
                                                    *****************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-1955122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-1857119IPR009057Homeodomain-like
PROSITE profilePS5007116.26165121IPR001356Homeobox domain
SMARTSM003897.5E-1667129IPR001356Homeobox domain
CDDcd000865.42E-1668122No hitNo description
PfamPF000461.3E-1669122IPR001356Homeobox domain
PfamPF021837.6E-10131165IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.4E-22131174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
LICFGIDHVY AWLCFIFISS FVWGLLFTDH YFAVRDLDIN QVPSIGAEED WITMNMDDEE  60
ESSNGGPPRK KLRLTKEQSR LLEESFRQNH TLNPKQKEAL AMQLKLRPRQ VEVWFQNRRA  120
RHCGLNRSKL KQTEMECEYL KRWFGSLTEQ NRRLQREVEE LRAMKVGPPT VISPHSCEPL  180
PASTLTMCPR CERVTTTNLE KGPIKTAITT PTTTTMSTKV TTSTLQSRQS PAAC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150348e-43AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910616.11e-120homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX15e-78HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH385e-78HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2N9EQL01e-115A0A2N9EQL0_FAGSY; Uncharacterized protein
STRINGEOY009641e-114(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95063040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.15e-68homeobox-leucine zipper protein 17