PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01555-augustus-gene-0.23-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 224aa    MW: 25210.8 Da    PI: 9.0666
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01555-augustus-gene-0.23-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.7e-2065119256
                                                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                    rk+ ++tkeq + Lee F++n++++ +++e LA++l+L  rqV vWFqNrRa+ k
  maker-scaffold01555-augustus-gene-0.23-mRNA-2  65 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSK 119
                                                    78889************************************************98 PP
2HD-ZIP_I/II118.63.4e-3865153189
                                    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64 
                                                    +kk+rl+keq++lLEesF+++++L+p++K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e
  maker-scaffold01555-augustus-gene-0.23-mRNA-2  65 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALAMQLKLRPRQVEVWFQNRRARSKLKQTEMECE 128
                                                    69************************************************************** PP

                                    HD-ZIP_I/II  65 aLkraydalkeenerLekeveeLre 89 
                                                    +Lkr++ +l+e+n+rL++eveeLr+
  maker-scaffold01555-augustus-gene-0.23-mRNA-2 129 YLKRWFGSLTEQNRRLQREVEELRA 153
                                                    ***********************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-1951122IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.2E-1951119IPR009057Homeodomain-like
PROSITE profilePS5007117.31361121IPR001356Homeobox domain
SMARTSM003898.5E-1863125IPR001356Homeobox domain
CDDcd000863.36E-1664122No hitNo description
PfamPF000464.6E-1765119IPR001356Homeobox domain
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
SMARTSM003404.4E-22121164IPR003106Leucine zipper, homeobox-associated
PfamPF021837.1E-10121155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAVLPSSSSA LELTMSMPGF ASSSSLPSSV RDLDINQVPS IGAEEDWITM NMDDEEESSN  60
GGPPRKKLRL TKEQSRLLEE SFRQNHTLNP KQKEALAMQL KLRPRQVEVW FQNRRARSKL  120
KQTEMECEYL KRWFGSLTEQ NRRLQREVEE LRAMKVGPPT VISPHSCEPL PASTLTMCPR  180
CERVTTTNLE KGPIKTAITT PTTTTMSTKV TTSTLQSRQS PAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARSKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150348e-43AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910616.11e-138homeobox-leucine zipper protein HOX3-like
SwissprotQ0JKX11e-86HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-86HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLA0A2N9EQL01e-132A0A2N9EQL0_FAGSY; Uncharacterized protein
STRINGcassava4.1_022041m1e-128(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-79homeobox-leucine zipper protein 17