PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01582-snap-gene-0.43-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 204aa    MW: 24367.8 Da    PI: 5.7151
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01582-snap-gene-0.43-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.12.3e-074886242
                                       FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkre 42
                                                Yn+YA ++ Fsvrk+k ++  +ng + +r++vCsk+ ++e
  maker-scaffold01582-snap-gene-0.43-mRNA-1 48 LYNDYAIRIEFSVRKEKLRYA-KNG-VRQREYVCSKKDFHE 86
                                               7****************9998.666.9*********98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-44886IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTEVVAEIHT PPLQLTKIDQ DIRADEELQD IENLLGMVVH SEDEAYNLYN DYAIRIEFSV  60
RKEKLRYAKN GVRQREYVCS KKDFHEMMAI WMIRNSKDYK LGLVVKLVFE IEFQSCWDAL  120
LRDYNLVGNK WLSTLYENRE RWCSVFSYNI FSCRMKASSR SESTNNVFQH MACKTMRLTE  180
FVHEYEKASK SMRTEELEED FCCK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023917131.14e-57protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-12FAR1-related sequence 5