PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01628-snap-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 240aa    MW: 26512.4 Da    PI: 9.6049
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01628-snap-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.51e-2835136197
                                     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvy 63 
                                                +C++C+vlr++C++ Cvl+ ++     p++q ++  +++k+FG+s v+ +++a+pe++r+++++sl++
  maker-scaffold01628-snap-gene-0.30-mRNA-1  35 SCNGCRVLRKGCSDTCVLRSCLqwiesPKAQGNAVLFLAKFFGRSDVIAFVSAVPETQRPALFQSLLF 102
                                                6******************************************************************* PP

                                     DUF260  64 eAearardPvyGavgvilklqqqleqlkaelall 97 
                                                eA+ r+ +Pv G+vg++ +++++++q++++++l+
  maker-scaffold01628-snap-gene-0.30-mRNA-1 103 EACGRTVNPVDGSVGLLARGKWHVCQTAVDTVLA 136
                                                ***************************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.5434140IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-2435134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
DYSSSSPSFC IKFCRFDHKR KGKKKNFKSK WVRMSCNGCR VLRKGCSDTC VLRSCLQWIE  60
SPKAQGNAVL FLAKFFGRSD VIAFVSAVPE TQRPALFQSL LFEACGRTVN PVDGSVGLLA  120
RGKWHVCQTA VDTVLAGGTP TPLTEFETHT NGIFHDTTCN PYLPFTAFMQ EAHQPSDPAL  180
TLSLGPKKIT TKPWSGYPRA LKQRMMAENT TSSSFSSEVS EMTSFGSSGN DQKKVLNLFV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886298.11e-130LOB domain-containing protein 39-like
SwissprotQ9FN112e-55LBD37_ARATH; LOB domain-containing protein 37
TrEMBLA0A2N9E9Z18e-92A0A2N9E9Z1_FAGSY; Uncharacterized protein
STRINGXP_008365099.12e-68(Malus domestica)
STRINGXP_008377972.12e-68(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.16e-57LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]