PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01634-snap-gene-0.14-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SAP
Protein Properties Length: 420aa    MW: 46470.4 Da    PI: 6.6702
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01634-snap-gene-0.14-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP586.29.2e-179141852454
                                        SAP  52 latqvaidasrslGrlaaasalanvfqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrh 119
                                                la+qvaidas+s+Grlaaa+alanvfqvcstwravsr d lw+rltr iW rt+ll+dtW++e++y+h
  maker-scaffold01634-snap-gene-0.14-mRNA-1   1 LAAQVAIDASHSIGRLAAAPALANVFQVCSTWRAVSRWDALWHRLTRSIWGRTQLLHDTWHDEFVYWH 68 
                                                89****************************************************************** PP

                                        SAP 120 rtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhvstfl 187
                                                rta+nf+t+r+++ tl+fd+   d+   +d ++Crc+++sd++la+GfadGavr+fdl+ + hv t++
  maker-scaffold01634-snap-gene-0.14-mRNA-1  69 RTAQNFHTGRSAHGTLAFDDV--DN---QDGYTCRCMTMSDRHLACGFADGAVRVFDLAMHNHVVTLR 131
                                                ******************996..33...47899*********************************** PP

                                        SAP 188 pqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGs.. 253
                                                p+++++lG+f+ravsGivi+ ++l+fatldGdihva+i g g +  rra+ G+vvndGalvdf+G+  
  maker-scaffold01634-snap-gene-0.14-mRNA-1 132 PHEGNHLGQFARAVSGIVINGATLAFATLDGDIHVAMIIG-GGGVIRRAHEGNVVNDGALVDFTGCgs 198
                                                **************************************99.5599******************98733 PP

                                        SAP 254 grWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvt.........e 312
                                                grWwvGlyaG+p rafhiWd+ teelv+v Gslt+Pe+vmGWh+l +  ++vGrvrv          +
  maker-scaffold01634-snap-gene-0.14-mRNA-1 199 GRWWVGLYAGAPNRAFHIWDSVTEELVYVNGSLTNPESVMGWHLLINENQFVGRVRVVttiiseeeeD 266
                                                69******************************************************843344433324 PP

                                        SAP 313 retavaCtslrlvvfdlrnqgvvlreeeerrGlivssldasnea.yvvvdsrGvatvrrvenleevcr 379
                                                ++ avaCts+rl+vfdlrn+ v l eee++rG+iv+s+d+sn+a y++vd+rG a+v r  +leevcr
  maker-scaffold01634-snap-gene-0.14-mRNA-1 267 HQLAVACTSSRLIVFDLRNPAVTLFEEESNRGFIVTSVDVSNDArYIRVDNRGDARVCRLGTLEEVCR 334
                                                678*************************************999869********************** PP

                                        SAP 380 frvrg........aqrg..vlgCvnggyalvyaggvlrvWeiekkegylyslrervgevnalvaddrh 437
                                                f++ g        +qr+  v+gC+n+gyal++ gg++rvWe+ + + yly++rer+gevna+va++r+
  maker-scaffold01634-snap-gene-0.14-mRNA-1 335 FNIYGgggggrsgSQRRvmVMGCMNLGYALMCVGGMIRVWEVLHGG-YLYHFRERIGEVNAVVANERY 401
                                                **95433333445677733579********************9965.********************* PP

                                        SAP 438 vavsssdgtihlldfga 454
                                                va++ssd  ihl+dfga
  maker-scaffold01634-snap-gene-0.14-mRNA-1 402 VAAASSDRRIHLWDFGA 418
                                                ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.1280.507.8E-62093No hitNo description
SuperFamilySSF813839.16E-72169IPR001810F-box domain
SuperFamilySSF509781.61E-1792415IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.8E-696168IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.106.5E-11205416IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS502949.626369420IPR017986WD40-repeat-containing domain
PROSITE profilePS500828.871398420IPR001680WD40 repeat
PROSITE patternPS006780402416IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
LAAQVAIDAS HSIGRLAAAP ALANVFQVCS TWRAVSRWDA LWHRLTRSIW GRTQLLHDTW  60
HDEFVYWHRT AQNFHTGRSA HGTLAFDDVD NQDGYTCRCM TMSDRHLACG FADGAVRVFD  120
LAMHNHVVTL RPHEGNHLGQ FARAVSGIVI NGATLAFATL DGDIHVAMII GGGGVIRRAH  180
EGNVVNDGAL VDFTGCGSGR WWVGLYAGAP NRAFHIWDSV TEELVYVNGS LTNPESVMGW  240
HLLINENQFV GRVRVVTTII SEEEEDHQLA VACTSSRLIV FDLRNPAVTL FEEESNRGFI  300
VTSVDVSNDA RYIRVDNRGD ARVCRLGTLE EVCRFNIYGG GGGGRSGSQR RVMVMGCMNL  360
GYALMCVGGM IRVWEVLHGG YLYHFRERIG EVNAVVANER YVAAASSDRR IHLWDFGADQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028953353.11e-176transcriptional regulator STERILE APETALA-like
SwissprotQ9FKH11e-143SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A498H9131e-174A0A498H913_MALDO; Uncharacterized protein
STRINGXP_009343485.11e-173(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76873146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-143SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]