PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01655-augustus-gene-0.20-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 344aa MW: 38832.5 Da PI: 6.5129

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01655-augustus-gene-0.20-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.3	2.5e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 lppGfrFhPtdeel+++yL +kv + ++++ +i evd++k+ePwdLp ++k +ekewyfF+ r maker-scaffold01655-augustus-gene-0.20-mRNA-1 16 LPPGFRFHPTDEELITHYLSPKVLDANFST-VAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVR 78 79***********************999.67***********888999****** PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d+ky+tg r+nrat++gyWkatgkdke+++ +++lvg+kktLvfykgrapkgek++Wvmheyrl maker-scaffold01655-augustus-gene-0.20-mRNA-1 79 DRKYPTGLRTNRATDAGYWKATGKDKEIYK-GKALVGMKKTLVFYKGRAPKGEKSNWVMHEYRL 141 *************************9.99****************************8 PP NAM 129 e 129 e maker-scaffold01655-augustus-gene-0.20-mRNA-1 142 E 142 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-63	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.477	16	166	IPR003441	NAC domain
Pfam	PF02365	8.5E-30	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MENVSTTAKE DEQIELPPGF RFHPTDEELI THYLSPKVLD ANFSTVAIGE VDLNKCEPWD 60 LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATDAGYWKAT GKDKEIYKGK ALVGMKKTLV 120 FYKGRAPKGE KSNWVMHEYR LEGKYSGYNL PKTARNEWVI CRVFNKTSGG KKNHISGLMK 180 LSSYANESCP SLLPPLMDSS PYNSETRTGA GETSHGTCFS NPMEDHKTKE RMVDNFNTGL 240 LAASSSLSPS YISSAPNSDY CTNMGNLQYS DTALMQDQLF RMLFENHAGN MKQNMKAEFS 300 SETGFSADMS SVVSNHDMAR RSFEDQDDPS NSGGPVDIDC LWNY

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MENVSTTAKE DEQIELPPGF RFHPTDEELI THYLSPKVLD ANFSTVAIGE VDLNKCEPWD  60
LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATDAGYWKAT GKDKEIYKGK ALVGMKKTLV  120
FYKGRAPKGE KSNWVMHEYR LEGKYSGYNL PKTARNEWVI CRVFNKTSGG KKNHISGLMK  180
LSSYANESCP SLLPPLMDSS PYNSETRTGA GETSHGTCFS NPMEDHKTKE RMVDNFNTGL  240
LAASSSLSPS YISSAPNSDY CTNMGNLQYS DTALMQDQLF RMLFENHAGN MKQNMKAEFS  300
SETGFSADMS SVVSNHDMAR RSFEDQDDPS NSGGPVDIDC LWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-55	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	7e-55	13	172	17	174	NAC domain-containing protein 19
3swm_B	7e-55	13	172	17	174	NAC domain-containing protein 19
3swm_C	7e-55	13	172	17	174	NAC domain-containing protein 19
3swm_D	7e-55	13	172	17	174	NAC domain-containing protein 19
3swp_A	7e-55	13	172	17	174	NAC domain-containing protein 19
3swp_B	7e-55	13	172	17	174	NAC domain-containing protein 19
3swp_C	7e-55	13	172	17	174	NAC domain-containing protein 19
3swp_D	7e-55	13	172	17	174	NAC domain-containing protein 19
4dul_A	7e-55	13	172	14	171	NAC domain-containing protein 19
4dul_B	7e-55	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023887029.1	0.0	NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-135	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2N9GZ15	0.0	A0A2N9GZ15_FAGSY; Uncharacterized protein
STRING	EMJ16814	1e-174	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-128	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]