PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01677-snap-gene-0.38-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Protein Properties

Length: 223aa MW: 25683.3 Da PI: 9.9891

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01677-snap-gene-0.38-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.9	2.5e-15	145	218	11	93
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 ++ lp kf+e+h +k + ++++ledesg ++e k+i + + + l++GW+ F+ +++L++gD maker-scaffold01677-snap-gene-0.38-mRNA-1 145 RSH---GLPSKFCEDHL-PK-TLFDMVLEDESGAEYEAKYI--GER--TGLSGGWRAFALEHKLDDGD 203 444...49***9995.44.568************4..444..33************** PP EEEEEE-SSSEE..E CS B3 79 fvvFkldgrsefelv 93 +vF+l++ +f+l+ maker-scaffold01677-snap-gene-0.38-mRNA-1 204 ALVFELIEPARFKLY 218 ****987777665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	6.08E-18	132	218	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.7E-18	132	217	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.77E-20	137	218	No hit	No description
SMART	SM01019	3.2E-16	139	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.2E-13	144	218	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.348	149	223	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MAKTCIDNSY EALRNQRLEL NKKKFEDLGI LRISKSLGEL TNSEKKYQQR LPKLKSKTTV 60 VSEPRRSSRA RNPVPSYRDE IDIGITHLRK RSRSRSTSYG SYLARPIEEV KEATPRQRQR 120 AMEAAVELQN NLKSENPSFV KTMVRSHGLP SKFCEDHLPK TLFDMVLEDE SGAEYEAKYI 180 GERTGLSGGW RAFALEHKLD DGDALVFELI EPARFKLYNT LMR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	94	KRSRSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023895349.1	1e-143	putative B3 domain-containing protein At5g58280
Swissprot	Q5KQI4	3e-55	Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBL	A0A2I4FVJ3	1e-106	A0A2I4FVJ3_JUGRE; putative B3 domain-containing protein At5g58280
STRING	XP_007142002.1	8e-97	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12433	23	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58280.1	2e-48	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]