PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01681-snap-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C3H
Protein Properties Length: 485aa    MW: 53061.3 Da    PI: 7.9008
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01681-snap-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.9e-1085110126
                                                --S---SGGGGTS--TTTTT-SS-SS CS
                                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                                +++++C +++rtG C yG++C+++H+
  maker-scaffold01681-snap-gene-0.23-mRNA-1  85 PGEPNCLYYLRTGLCGYGSNCRYNHP 110
                                                5789*********************8 PP
2zf-CCCH21.44.6e-071341491227
                                                TS--TTTTT-SS-SSS CS
                                    zf-CCCH  12 tGtCkyGdrCkFaHgp 27 
                                                tGtCkyG++Ck++H++
  maker-scaffold01681-snap-gene-0.23-mRNA-1 134 TGTCKYGSTCKYHHPR 149
                                                8*************96 PP
3zf-CCCH37.93e-12172194527
                                                --SGGGGTS--TTTTT-SS-SSS CS
                                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                                                 C++++rtG Ck+G  CkF+H++
  maker-scaffold01681-snap-gene-0.23-mRNA-1 172 SCPYYMRTGSCKFGVACKFHHPQ 194
                                                6********************97 PP
4zf-CCCH39.68.7e-13325350227
                                                -S---SGGGGTS--TTTTT-SS-SSS CS
                                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                                ++++Cr+f+ +GtCkyG+ CkF+H++
  maker-scaffold01681-snap-gene-0.23-mRNA-1 325 DQPECRYFMNNGTCKYGSDCKFHHPK 350
                                                689*********************96 PP
5zf-CCCH35.22.1e-11368392226
                                                -S---SGGGGTS--TTTTT-SS-SS CS
                                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                                +++ C++++ +G CkyG++CkF H+
  maker-scaffold01681-snap-gene-0.23-mRNA-1 368 GQAVCSYYSMYGLCKYGPTCKFDHP 392
                                                7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-484111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.82184112IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-886110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-589110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.00190109IPR000571Zinc finger, CCCH-type
SMARTSM003561126149IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-4134149IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.85134150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6166195IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108167195IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4169194IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10171194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-5172193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.708323351IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-6323350IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10325350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-7325352IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-6329350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6364392IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-7366393IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.76366394IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-8368392IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4371391IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
YLSDLRVSDL CERLKIFSGF DWKRSLESGV HTTSVLPMPD NRQVQKNAMP NQSANNIEEA  60
FWRLKLNDNQ EGGGAAQSAA YPDRPGEPNC LYYLRTGLCG YGSNCRYNHP SYASQGAVYS  120
GELPERVGQP DCGTGTCKYG STCKYHHPRD RRGAGPVSFN ILGLPMRQEE KSCPYYMRTG  180
SCKFGVACKF HHPQPASLGP VLPVPGHVAF GSMAPTVVPS SGLPYVGGFP AWSLPRMPYV  240
SSPRWQDLQS YPSVPFSPSQ GIVSAQGWNT YNSYTGNMSP MSPTSSASVL GSSFVYNSKN  300
LGESGSSGQV HLSSTPALIL PERPDQPECR YFMNNGTCKY GSDCKFHHPK ERIAQSIATQ  360
PGLPLRPGQA VCSYYSMYGL CKYGPTCKFD HPVVAPPYNY TLSLPTLSML DSPLFNYPRS  420
LSTAHSSETS PSKSSKFPDW VQKHDATNNE HENSDTKTPE DSPEQAASSP RPIPTSTEPL  480
HDQSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0976695e-52BT097669.1 Soybean clone JCVI-FLGm-22K6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023881040.10.0zinc finger CCCH domain-containing protein 3-like isoform X1
TrEMBLA0A2N9ESW60.0A0A2N9ESW6_FAGSY; Uncharacterized protein
STRINGEMJ165520.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-108C3H family protein