PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01687-augustus-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YB
Protein Properties Length: 184aa    MW: 20479.3 Da    PI: 4.4067
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01687-augustus-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB38.33.2e-12761224086
                                          NF-YB  40 sefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 
                                                     efi +++se+++ c re+++ti+++ +l al  lGf +y++++ + 
  maker-scaffold01687-augustus-gene-0.19-mRNA-1  76 LEFINLISSESNEVCSREEKRTIAPEHVLKALQVLGFGEYIDEVYAA 122
                                                    59****************************************98654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.6E-10848IPR009072Histone-fold
SuperFamilySSF471134.97E-81248IPR009072Histone-fold
PfamPF008083.1E-71448IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.2E-2277168IPR009072Histone-fold
PfamPF008088.1E-777107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.3E-1977169IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVGQ VFIGSKAEQK  60
LFVQTLASFD TVCFKLEFIN LISSESNEVC SREEKRTIAP EHVLKALQVL GFGEYIDEVY  120
AAYEQHKLET MQDSLKGGKW SNGAEMTEEE ALAEQQRMFA EARARMNGGA APPKEPDSDQ  180
TLDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-281216312133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023874746.11e-107protein Dr1 homolog isoform X1
RefseqXP_023884927.11e-107protein Dr1 homolog isoform X1
SwissprotP495922e-86NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A2I4HHH31e-100A0A2I4HHH3_JUGRE; protein Dr1 homolog isoform X1
STRINGXP_007155169.11e-100(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47663358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.29e-89nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]