PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01705-snap-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 508aa    MW: 55412.9 Da    PI: 8.6664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01705-snap-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-0579101123
                                                EEETTTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                ++C++C+k F r  nL+ H r H
  maker-scaffold01705-snap-gene-0.24-mRNA-1  79 FVCEICSKGFQRDQNLQLHRRGH 101
                                                89*******************88 PP
2zf-C2H212.70.00038155177123
                                                EEETTTTEEESSHHHHHHHHHHT CS
                                    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                                +kC++C+k +  +s+ k H +t+
  maker-scaffold01705-snap-gene-0.24-mRNA-1 155 WKCEKCSKKYAVQSDWKAHSKTC 177
                                                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.6E-678101No hitNo description
Gene3DG3DSA:3.30.160.606.1E-578101IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03679101IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88779101IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SMARTSM00355240120150IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-4143176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.6E-6150175No hitNo description
SMARTSM00355140155175IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MSNITGGEAG SFSSGNTGGE EVQQQDEQLN HYDPNNGSTT QQQQQAPPAK KKRNLPGTPD  60
PSAEVIALSP TTLMATNRFV CEICSKGFQR DQNLQLHRRG HNLPWKLKQR TTTEIRKRVY  120
VCPESSCVHH NPARALGDLT GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR  180
EYKCDCGTIF SRRDSFITHR AFCDALSEEN NKAKQGLLSN MGQNLPGQVH PQLMSSIPIN  240
NNNNSNTTSG TSGFNQSDTK VPISLPQDIM SFSTNKPLNM VGSLFSGPRS ISSSSPSLQL  300
NTNSSSSIFE GNGHQLAGLA AHMPATALLQ KAAQMGATVS TSGMNCQVMQ NNSFGTSMAP  360
PSFSAIQPQN DQSFINQFIQ KGQHGNSYEN GMPDNLGMTN MGMLSGLLDQ NSALLKNIKH  420
DNSNSNSTVL HGGDSKAGLS SSIKESNGSE DMMTLDFLGI GGGARHGNFY ELQQQKQQEM  480
GFEGIGQRIQ GLSHFQQQAS MEKPMWEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34151220370Zinc finger protein JACKDAW
5b3h_F2e-34151220370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883360.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-112IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A2N9J1I10.0A0A2N9J1I1_FAGSY; Uncharacterized protein
STRINGEOY114640.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-97C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]