PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01746-augustus-gene-0.17-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

GRF

Protein Properties

Length: 620aa MW: 67057.7 Da PI: 8.7109

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01746-augustus-gene-0.17-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	222	266	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e maker-scaffold01746-augustus-gene-0.17-mRNA-1 222 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 266 79****************************************985 PP
2	QLQ	62.9	8.2e-22	152	188	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyL an PvP++Ll +i+k maker-scaffold01746-augustus-gene-0.17-mRNA-1 152 GPFTPSQWMELEHQALIYKYLTANIPVPSNLLIPIRK 188 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	4.9E-13	152	188	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	24.109	153	188	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	7.6E-16	153	187	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.663	222	266	IPR014977	WRC domain
Pfam	PF08879	7.4E-21	223	265	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence Send to blast
MDFGVVGLDG LVGSEATGFS SLASDPETKQ KWYGSGLFKQ ERSGNSEDDW RSSKLLKTDD 60 FVASKTMQLQ HRNTLLRSNC TTLYSDGQQQ QQQMLSFSSP KSESFLAEKN SHNATLLPYY 120 HHSLSGYGKN IGCSSGSLNG TSMNGVLAGA RGPFTPSQWM ELEHQALIYK YLTANIPVPS 180 NLLIPIRKAL DSAGFSSFPG GLLRPNTLGW GSFHLGFSNN TDPEPGRCRR TDGKKWRCSR 240 DAVADQKYCE RHMNRGRHRS RKPVEGQTGH AVSGTPTTTA TTSTSTSSTI SKLSPIASSS 300 SASVVVPVGA SNSLAIASHQ QLKSLQPGAS NPSAATTINR MFINKDNVGE RMQDTPGLSI 360 LSSSIDHKPK ENPFMIQKQL IPYEESTRTE FGLVTSDALL NPSNKSSSLM NCSSQELSDR 420 RTESQQSLRH FIDDWPKIQS DRSAVSWPKL DMQSDRTQLS ISIPMASSDF ISSTSSPSSN 480 EKLTLSPLRL SRELDPIRMG LGVSSAINEP NQRQTNWIPI SWETSMGGPL GEVLHHSNNN 540 VVDCKRSSAL NLMTAGWDSS PPLGSSPTGV LQKTTFGSLS NSSAGSSPRA DNHRTLEGAS 600 LCNDLLGSTL VNSSSSLPAL

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence Send to blast

MDFGVVGLDG LVGSEATGFS SLASDPETKQ KWYGSGLFKQ ERSGNSEDDW RSSKLLKTDD  60
FVASKTMQLQ HRNTLLRSNC TTLYSDGQQQ QQQMLSFSSP KSESFLAEKN SHNATLLPYY  120
HHSLSGYGKN IGCSSGSLNG TSMNGVLAGA RGPFTPSQWM ELEHQALIYK YLTANIPVPS  180
NLLIPIRKAL DSAGFSSFPG GLLRPNTLGW GSFHLGFSNN TDPEPGRCRR TDGKKWRCSR  240
DAVADQKYCE RHMNRGRHRS RKPVEGQTGH AVSGTPTTTA TTSTSTSSTI SKLSPIASSS  300
SASVVVPVGA SNSLAIASHQ QLKSLQPGAS NPSAATTINR MFINKDNVGE RMQDTPGLSI  360
LSSSIDHKPK ENPFMIQKQL IPYEESTRTE FGLVTSDALL NPSNKSSSLM NCSSQELSDR  420
RTESQQSLRH FIDDWPKIQS DRSAVSWPKL DMQSDRTQLS ISIPMASSDF ISSTSSPSSN  480
EKLTLSPLRL SRELDPIRMG LGVSSAINEP NQRQTNWIPI SWETSMGGPL GEVLHHSNNN  540
VVDCKRSSAL NLMTAGWDSS PPLGSSPTGV LQKTTFGSLS NSSAGSSPRA DNHRTLEGAS  600
LCNDLLGSTL VNSSSSLPAL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023872645.1	0.0	growth-regulating factor 1-like
Swissprot	Q6AWY3	1e-122	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A2N9F1V9	0.0	A0A2N9F1V9_FAGSY; Uncharacterized protein
STRING	VIT_18s0001g08650.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2085	34	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-103	growth-regulating factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]