PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01789-snap-gene-0.35-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 303aa MW: 33817.8 Da PI: 6.506

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01789-snap-gene-0.35-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.4	4.4e-30	19	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleevikevdiykvePwdLpk......kvkaee 55 lppG+rFhP+++elv++yL++k ++ + + + i+e+++++++P +Lp + +++ maker-scaffold01789-snap-gene-0.35-mRNA-1 19 LPPGCRFHPSQHELVSYYLANKNRDPDpnpdenfSNGYDLIRELNLFDYDPFELPDdtcfsyGFGGRK 86 79*******************99986665554333458**********95467766555588 PP NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkge.ktdW 121 ++wy +++++++ r++r+tk+gyWk gk ++v+ ++ +vg +k++vfy g++p++ +t+W maker-scaffold01789-snap-gene-0.35-mRNA-1 87 RHWYCYCCSSSS---RIRSRRKTKNGYWKRNGKVRDVVGPcGRVQVGSRKSFVFYLGNSPETAfRTSW 151 8***9886...4699***************9978889******998877655 PP NAM 122 vmheyrl 128 v+ ey+l maker-scaffold01789-snap-gene-0.35-mRNA-1 152 VLYEYAL 158 ***87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-34	15	174	IPR003441	NAC domain
PROSITE profile	PS51005	36.413	19	174	IPR003441	NAC domain
Pfam	PF02365	2.5E-19	20	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MGDPIPSTQK LKPTTSFSLP PGCRFHPSQH ELVSYYLANK NRDPDPNPDE NFSNGYDLIR 60 ELNLFDYDPF ELPDDTCFSY GFGGRKRHWY CYCCSSSSRI RSRRKTKNGY WKRNGKVRDV 120 VGPCGRVQVG SRKSFVFYLG NSPETAFRTS WVLYEYALLD HPKASFVVCR VFSKSRAGNS 180 ISDNGLSSCA EESISAVRHI GTQHDGYLTS DTVEAKIQGD NSVDGNNEIP RYPKQLGSKL 240 EDQIMTGPVS VASLPFPSVM QPRELVSSTG LPGSGSMFVE GLTDQQLSSI LEEGFIELND 300 LMD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-19	9	179	7	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-19	9	179	7	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-19	9	179	7	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-19	9	179	7	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-19	9	180	10	174	NAC domain-containing protein 19
3swm_B	1e-19	9	180	10	174	NAC domain-containing protein 19
3swm_C	1e-19	9	180	10	174	NAC domain-containing protein 19
3swm_D	1e-19	9	180	10	174	NAC domain-containing protein 19
3swp_A	1e-19	9	180	10	174	NAC domain-containing protein 19
3swp_B	1e-19	9	180	10	174	NAC domain-containing protein 19
3swp_C	1e-19	9	180	10	174	NAC domain-containing protein 19
3swp_D	1e-19	9	180	10	174	NAC domain-containing protein 19
4dul_A	1e-19	9	179	7	170	NAC domain-containing protein 19
4dul_B	1e-19	9	179	7	170	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023881636.1	0.0	NAC domain-containing protein 71-like
Refseq	XP_023881637.1	0.0	NAC domain-containing protein 71-like
TrEMBL	A0A2N9IDY5	1e-119	A0A2N9IDY5_FAGSY; Uncharacterized protein
STRING	EMJ25697	1e-105	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13001	26	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	9e-24	NAC domain containing protein 38