PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01814-snap-gene-0.34-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

G2-like

Protein Properties

Length: 227aa MW: 25201.5 Da PI: 9.7226

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01814-snap-gene-0.34-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.7	2.7e-33	34	88	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl maker-scaffold01814-snap-gene-0.34-mRNA-1 34 KPRLRWTADLHERFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 88 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-32	31	89	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.926	31	91	IPR017930	Myb domain
SuperFamily	SSF46689	1.58E-16	34	91	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-24	34	89	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-9	36	87	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MESNYSGGGG GGGGVGRAGS YPYENAVMMT RDPKPRLRWT ADLHERFVDA VTKLGGPDKA 60 TPKSVLRLMG LKGLTLYHLK SHLQKYRLGQ QARRQNTVEQ NKESNEAQGK YLQAILEKAH 120 KSLSLDITGP GSLEAARAQL TDFNLALSNL MENMNGGERK ENMNNIFKKP NSSAIQIYQE 180 VGREENEDVK LKIEGGLIQF DLNTKGSYDF FAANGAELET KMLSYRR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-20	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-20	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-20	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	34	90	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-20	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-20	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-20	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-20	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-20	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-20	34	90	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023889450.1	1e-118	myb family transcription factor PHL11
Swissprot	C0SVS4	3e-49	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A2N9FA75	1e-112	A0A2N9FA75_FAGSY; Uncharacterized protein
STRING	POPTR_0001s01560.1	5e-95	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-51	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]