PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01853-snap-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 317aa    MW: 35850.1 Da    PI: 4.342
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01853-snap-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-092482812255
                                                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                                   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                                 +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  maker-scaffold01853-snap-gene-0.23-mRNA-1 248 WPYPTEEEKLKLSEATGLDQKQINNWFINQRKRH 281
                                                59*****************************885 PP
2ELK36.78.7e-13201222122
                                        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                                +LK +LlrKYsgyL+sL++EF+
  maker-scaffold01853-snap-gene-0.23-mRNA-1 201 DLKGMLLRKYSGYLSSLRKEFL 222
                                                69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-2156100IPR005540KNOX1
PfamPF037902.6E-215899IPR005540KNOX1
SMARTSM012561.1E-24103154IPR005541KNOX2
PfamPF037919.6E-23106153IPR005541KNOX2
PfamPF037898.9E-10201222IPR005539ELK domain
PROSITE profilePS5121310.842201221IPR005539ELK domain
SMARTSM011881.1E-6201222IPR005539ELK domain
PROSITE profilePS5007112.746221284IPR001356Homeobox domain
SuperFamilySSF466893.04E-19223294IPR009057Homeodomain-like
SMARTSM003899.4E-13223288IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.6E-27226286IPR009057Homeodomain-like
CDDcd000862.65E-12233285No hitNo description
PfamPF059201.3E-16241280IPR008422Homeobox KN domain
PROSITE patternPS000270259282IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0010094Biological Processspecification of carpel identity
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEEFYRLNSV LSCSDEIVRV DNIVDATATT SAGFLCPMDN MLQVAETEVT ESEMTDLIKT  60
QISNHPLYPN LVSAYIECQK VGAPPEMASL LEEICRENHL LSTCSEIGAD PELDEFMESY  120
CEALHRYKEE LSKPFDEATT FLSSIELQLS NLCKGTLTRN LDYRSDEGAV GTSEEELSCG  180
EVDAPESQEY SSGAGTSGEQ DLKGMLLRKY SGYLSSLRKE FLKKRKKGKL PKDARTTLMD  240
WWNTHYRWPY PTEEEKLKLS EATGLDQKQI NNWFINQRKR HWKPSEDMRF ALMEGVTSSA  300
SEPMYLDTEG GTGGDDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216225LRKEFLKKRK
2222226KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894077.10.0homeobox protein knotted-1-like 1 isoform X1
SwissprotQ9FP292e-97KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLV5K8R31e-156V5K8R3_9ROSI; KNOX transcription factor 1
STRINGGorai.007G306500.11e-152(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.16e-85KNOTTED-like from Arabidopsis thaliana 2
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]