PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01868-augustus-gene-0.12-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

bHLH

Protein Properties

Length: 151aa MW: 16572.7 Da PI: 4.7117

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01868-augustus-gene-0.12-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.2	8.3e-05	8	43	13	54
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R+ +N+++++Lr ++ lsKa+i A +YI++L maker-scaffold01868-augustus-gene-0.12-mRNA-1 8 RAALNEKLQQLRAATNSN------ALSKASIIVDASKYINEL 43 677899999999877773......5**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-7	7	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-7	7	57	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	5.17E-6	89	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MASREHKRAA LNEKLQQLRA ATNSNALSKA SIIVDASKYI NELKQKVERL NQDIGTSQSS 60 KAQNSLPAVT VETLERGFLI NVFSEKNCPG LLVSILEAFE ELGLEVLDAR VSCSDIFQLQ 120 AVGGENRDSL DAQVVKQAVL EAIKNCNEEQ E

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023912302.1	1e-102	transcription factor bHLH61-like
TrEMBL	A0A2I4EIU5	2e-80	A0A2I4EIU5_JUGRE; uncharacterized protein LOC108989982
STRING	VIT_08s0058g00960.t01	4e-74	(Vitis vinifera)
STRING	EOY02633	5e-74	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF724	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-10	beta HLH protein 93