PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01875-snap-gene-0.31-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

TCP

Protein Properties

Length: 246aa MW: 25868.8 Da PI: 10.7728

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01875-snap-gene-0.31-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.7	1e-38	20	116	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a maker-scaffold01875-snap-gene-0.31-mRNA-1 20 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPA 87 69*****************************************************************9 PP TCP 71 seceaesssssasnsssg...........k 89 s++ ++s s+ +s+s+s+ k maker-scaffold01875-snap-gene-0.31-mRNA-1 88 SFS-TVSVSVRGSASNSTsaslssptsdhK 116 777.33333333333333123322222220 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-33	25	129	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	25	79	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MGPTTHRQQQ QSPGNGALGV KKPPSKDRHS KVDGRGRRIR MPIICAARVF QLTRELGHKS 60 DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TVSVSVRGSA SNSTSASLSS PTSDHKPTLL 120 SPAPFILGKR VRTDEDGNGK DDTSSMSSIV GSTSGGTGGF WAVPARPDFW TFAAAAAAAA 180 VPTPEMVAAQ QQPSLFMTHH HHHQHQQPMG EASAARVGNY LPGHLNLLAS LSGGPGSSGR 240 REDEPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF127975	2e-43	EF127975.1 Quercus suber clone 15E-F microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893731.1	1e-127	transcription factor TCP7-like
Swissprot	Q9FMX2	2e-89	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2I4ED74	1e-107	A0A2I4ED74_JUGRE; transcription factor TCP7-like
STRING	Gorai.013G068600.1	1e-106	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-57	TCP family protein