PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01903-augustus-gene-0.21-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 765aa    MW: 81664.7 Da    PI: 6.3174
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01903-augustus-gene-0.21-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.28e-08287315129
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                                                    r++W++ Ed+ l+ av++ G g+W+ I +
  maker-scaffold01903-augustus-gene-0.21-mRNA-1 287 RKPWSEAEDKELIAAVQKCGEGNWANILK 315
                                                    789***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.884282339IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-10283329IPR009057Homeodomain-like
SuperFamilySSF466893.52E-9283329IPR009057Homeodomain-like
SMARTSM007176.2E-5286336IPR001005SANT/Myb domain
PfamPF002491.5E-6287315IPR001005SANT/Myb domain
CDDcd116606.72E-11288329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MVEKTNNNTN TNKKHKTSSL TQDDISNLLQ RYNATTVLTL LQEVAHCADS KIDWDALVKN  60
TSTGISDARE YHMLWRHLAY HHALLDSFQY APHPLDDDSD LEYEVEAFPS VGGEASTEAA  120
ACVKVNSSNE WGQLDEFHFS ICTYVDGQIA LAILLGGAKA ELLLKKDLII ALELFSDVKI  180
PFVLIPSCLF SKGGCFVQVL IASGLPSDSS LPNSSIVEAP ITINIPNGLS SRAPLENSEA  240
TCSMQGTNIT IPVFVQKMPL PAATPTPAEV LDGNGPASGN FPPRRKRKPW SEAEDKELIA  300
AVQKCGEGNW ANILKGDFKG DRTASQLSQA TKHFTSAGCI YGGSCLSRWN IIRKKMGNLN  360
VESNSTGSQL SEARRAAHHA MSLALDMPVK NLTSTRPVFG TYLFRIWMTL LEYGTAVTNT  420
ASKSVLPTTT AEAAKVGSSS TQAQGLSQQG SIPIKPPPIG SLGPTAKSQV SSKKSSMQPT  480
IGSDSVLRAT AVAAGARIVS PSAAASFFKA TQTKNVVHFK PTGGSSTKSS VPAGVSTHSE  540
TQTNVHYVST GPKAIQCSSS PAVTVAPTVS HPSSVKAASP TVQCTASAFP TSSITSSEAT  600
NSIGSGLPSE LLVKQEIKRA EEIKVSESRS APKEQLQGDG VCVSANARIE QIQEDKAASA  660
DMEVEFEKQM TEVKSNGSLD TMTAESNHKA VIERRTEARQ NANDNEMRGS PVRNDNQSAP  720
RVESENEGTN EKQADLPSMV ADGCNEKPEV LIKESGNEIE EEKVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282288PRRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928234.10.0uncharacterized protein LOC112039577
TrEMBLA0A2N9FA760.0A0A2N9FA76_FAGSY; Uncharacterized protein
STRINGVIT_18s0001g07620.t011e-131(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.25e-36MYB_related family protein