PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01917-snap-gene-0.27-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 210aa    MW: 23960.7 Da    PI: 7.6329
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01917-snap-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-31123181159
                                                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                                +dDg++WrKYG+K+vk+s++pr+YY+C+s gC+vkk+ver+++d ++v++tYeg+Hnhe
  maker-scaffold01917-snap-gene-0.27-mRNA-1 123 MDDGFKWRKYGKKSVKNSPNPRNYYKCSSGGCNVKKRVERDRDDSSYVITTYEGTHNHE 181
                                                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-33110183IPR003657WRKY domain
SuperFamilySSF1182901.31E-27116183IPR003657WRKY domain
PROSITE profilePS5081131.261118183IPR003657WRKY domain
SMARTSM007741.5E-34123182IPR003657WRKY domain
PfamPF031062.1E-24124181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MDYPEYPNSN LSNTNLTGNS EPWSLDFELS EYLMLEDHHH HHGVDQDSTS QSMASSEQVM  60
GGSSGSTGAT LRNNNMQVIQ IFFFFQKIII MLILGRCKDG VKKNKMEAGH RVAFRTKSEL  120
EVMDDGFKWR KYGKKSVKNS PNPRNYYKCS SGGCNVKKRV ERDRDDSSYV ITTYEGTHNH  180
ESPCMLYYNQ MPYMIPNGWT SQASSHSSTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-25111183274WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023883657.11e-117probable WRKY transcription factor 51
TrEMBLA0A2K1ZR012e-75A0A2K1ZR01_POPTR; Uncharacterized protein
STRINGPOPTR_0007s06720.12e-75(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.17e-46WRKY DNA-binding protein 51