PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01958-augustus-gene-0.19-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRF
Protein Properties Length: 409aa    MW: 46134.9 Da    PI: 8.2011
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01958-augustus-gene-0.19-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.99.8e-2579122144
                                            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                                    d+epgrCrRtDGKkWRCs+++ +++k+CErH+hrg++rsrk++e
  maker-scaffold01958-augustus-gene-0.19-mRNA-1  79 DPEPGRCRRTDGKKWRCSKEAFPDSKYCERHMHRGKNRSRKPVE 122
                                                    79***************************************987 PP
2QLQ57.44.4e-20843237
                                            QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                                                   +FTa+Q+q+L++Q+l++Ky+a++ P+Pp+Ll  iq+
  maker-scaffold01958-augustus-gene-0.19-mRNA-1  8 PFTASQWQELEHQALIFKYMASGIPIPPDLLYTIQR 43
                                                   8*****************************988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.3E-11743IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.914843IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-15842IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.15679123IPR014977WRC domain
PfamPF088797.5E-2180122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MSGRNRFPFT ASQWQELEHQ ALIFKYMASG IPIPPDLLYT IQRSCLDSSL SSKFFPHQPH  60
QHVGLGWNCL QMGLGRKIDP EPGRCRRTDG KKWRCSKEAF PDSKYCERHM HRGKNRSRKP  120
VEVLKTTTTT TSYSSSSSTT TTNPSTSTIS SIARSHSAAL TPTSHYPNPF SSLSSMSSSD  180
THHSHLHLSY HTNSNPPHHH FLYHSPTSSS KTPGIGLSPH DNNATPLLLE SSPYSQTNAD  240
FRRNRYIYGL KEEVDEHAFF SEPSGTMRSL SGPLSMDDPW QLTPLTMSTS SSKQRSCSGL  300
QNQSDYSSYL QLQSLSDSTT KQSEEDQHFF VLGSDIKLME KEQPQPQPQK TIHHFFDEWP  360
PKERDSWVDQ LDDKSSNSSS VSTTRLSISI PNSSHHDFPI FSSRTHNGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818065e-67LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132565e-67LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872923.10.0growth-regulating factor 1-like isoform X1
TrEMBLA0A2N9HFA70.0A0A2N9HFA7_FAGSY; Uncharacterized protein
STRINGEOY302871e-160(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.18e-55growth-regulating factor 5