PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02009-augustus-gene-0.25-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

SRS

Protein Properties

Length: 256aa MW: 27400.7 Da PI: 4.644

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02009-augustus-gene-0.25-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	85.6	1.2e-26	122	177	99	154
DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le ++P+ev+s+avfrcvrvs+++d +e++aYqtavsigGhvfkGiLydqG+e+ maker-scaffold02009-augustus-gene-0.25-mRNA-1 122 GLELGQFPAEVNSPAVFRCVRVSAMEDPDEQYAYQTAVSIGGHVFKGILYDQGPED 177 567789************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.6E-24	105	176	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	1.6E-27	127	175	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MAGLFYLGGR EGSHNKQEEE EEKQENNSNS LYLYRNEEIY NHNSSSNNKG FELWPQQQYY 60 PPQQNLSNFY SFGVGPSSRR ISNHNLNDVS DHHESSRSGF TLMRQGGLGG LGGGGMNCQD 120 CGLELGQFPA EVNSPAVFRC VRVSAMEDPD EQYAYQTAVS IGGHVFKGIL YDQGPEDRYT 180 TGGEISSGGG SGGGGGGGGT QPLNLITAGT TSTNVTTAST SNNPTTTTTL LDPSSLFPAP 240 INAFMAGTQF FPPPRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	199	SGGGSGGGGGGGGT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023883335.1	2e-62	protein SHI RELATED SEQUENCE 5-like
Swissprot	Q9SD40	1e-36	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	6e-37	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A2P5R1X0	1e-70	A0A2P5R1X0_GOSBA; Uncharacterized protein
STRING	EOX90942	3e-45	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	2e-31	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]