PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02032-augustus-gene-0.12-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 237aa    MW: 26698.6 Da    PI: 7.9169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02032-augustus-gene-0.12-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-1368114354
                                                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                                    ++h+e+E+rRR+riNs +++Lr+llP +      K +Ka+ L k+v+ +k+L
  maker-scaffold02032-augustus-gene-0.12-mRNA-1  68 KNHKEAEKRRRERINSHLDKLRSLLPCN-----SKTDKASLLAKVVQRVKEL 114
                                                    58*************************8.....7************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.76465114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-1368117No hitNo description
PfamPF000106.7E-1168114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1469130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1469125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-1271120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2607.1E-5152215No hitNo description
CDDcd048730.00169152216No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MHQPENHDLY RFLTGNGVFN VGPYGFPEVN SCELAGMPSF CSSSSYYPLE VSGLADTPPQ  60
DRALMALKNH KEAEKRRRER INSHLDKLRS LLPCNSKTDK ASLLAKVVQR VKELKEQTSE  120
ITELEALPSE TDEITVLSGD YTSDGRLIFK ASLCCEDRTD LMPDLIEILK SLHLKTLKAE  180
MATLGGRIRN VLIVAADKDH SIESVHFLQN ALKSLLERSS SSDRSKRRRI LDRKIVM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225229KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885962.11e-173transcription factor bHLH106
SwissprotO806746e-89BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2I4DTT81e-134A0A2I4DTT8_JUGRE; transcription factor bHLH106-like
STRINGEOY088091e-132(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66723249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.19e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]