PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02057-snap-gene-0.32-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

EIL

Protein Properties

Length: 75aa MW: 8341.81 Da PI: 9.5555

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02057-snap-gene-0.32-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	122.1	9.6e-38	1	73	49	121
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 49 msraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaiskyqakn 116 ms aQDgiLkYMlk +evc+a+ fvYgiip+kgk+v+gas+++raWWkekv+fd+ng aai+ky+a++ maker-scaffold02057-snap-gene-0.32-mRNA-1 1 MSSAQDGILKYMLKLLEVCKAREFVYGIIPKKGKLVSGASNNIRAWWKEKVKFDKNGLAAIAKYEADC 68 899***************************************************************** PP XXXXX CS EIN3 117 lilsg 121 l++s+ maker-scaffold02057-snap-gene-0.32-mRNA-1 69 LAMSE 73 *9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	4.0E-36	1	73	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 75 aa Download sequence Send to blast
MSSAQDGILK YMLKLLEVCK AREFVYGIIP KKGKLVSGAS NNIRAWWKEK VKFDKNGLAA 60 IAKYEADCLA MSEDG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ298994	2e-81	AJ298994.1 Fagus sylvatica mRNA for EIN3/EIL-like transcription regulator (einl1 gene), clone FsEINL1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018810449.1	1e-39	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Refseq	XP_018810450.1	1e-39	PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
Swissprot	O23116	1e-35	EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBL	A0A2I4DTH9	3e-38	A0A2I4DTH9_JUGRE; ETHYLENE INSENSITIVE 3-like 3 protein
STRING	XP_009374861.1	3e-37	(Pyrus x bretschneideri)
STRING	XP_006494725.1	3e-37	(Citrus sinensis)
STRING	EMJ09505	3e-37	(Prunus persica)
STRING	GLYMA15G03650.1	3e-37	(Glycine max)
STRING	AES67727	3e-37	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF322	34	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73730.1	6e-38	ETHYLENE-INSENSITIVE3-like 3

Publications ? help Back to Top
Frerigmann H,Gigolashvili T Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency. Front Plant Sci, 2014. 5: p. 626 [PMID:25426131] Zheng ZL,Zhang B,Leustek T Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing. Front Plant Sci, 2014. 5: p. 710 [PMID:25566284] Panda SK,Sunkar R Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling. Plant Signal Behav, 2015. 10(4): p. e1010916 [PMID:25912823] Wawrzyńska A,Sirko A EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor. Plant Sci., 2016. 253: p. 50-57 [PMID:27968996]