PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02114-augustus-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 255aa    MW: 29262.9 Da    PI: 7.052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02114-augustus-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.25.9e-161461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT++Ed++l ++v+ +G g+W + +++ g++R++k c++rw++yl
  maker-scaffold02114-augustus-gene-0.15-mRNA-1 14 KGAWTAQEDKILTEYVRIHGEGQWGKLPKRAGLKRCGKGCRLRWLNYL 61
                                                   79********************************************97 PP
2Myb_DNA-binding53.17.2e-1767111147
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  maker-scaffold02114-augustus-gene-0.15-mRNA-1  67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 111
                                                    7899******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.17961IPR017930Myb domain
SuperFamilySSF466891.26E-2812108IPR009057Homeodomain-like
SMARTSM007171.8E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
CDDcd001673.54E-91661No hitNo description
PROSITE profilePS5129426.01862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2565116IPR009057Homeodomain-like
SMARTSM007173.9E-1666114IPR001005SANT/Myb domain
PfamPF002494.4E-1567111IPR001005SANT/Myb domain
CDDcd001671.37E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MGRRPCCSKE GLNKGAWTAQ EDKILTEYVR IHGEGQWGKL PKRAGLKRCG KGCRLRWLNY  60
LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS NLSRKVHDNK  120
CATPTPSGQS TEDKSKIDLQ VVQTNAINNK NDHFDTKDSW LSVDCDHTFN DKSLEFDMYH  180
GLSSFANGSD NIQSSDFMKD FNMEELCFSD LLISPYLPDS RVFECSNGYD NGLSPSLEKC  240
LIFSNEMLRD WSFIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4346104e-49AB434610.1 Fagus crenata FcMYBD5 mRNA for transcription factor MYBD5, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023890966.11e-171transcription factor MYB8-like
TrEMBLA0A2N9ING01e-119A0A2N9ING0_FAGSY; Uncharacterized protein
STRINGEOY302977e-85(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-62myb domain protein 4