PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02165-snap-gene-0.31-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 240aa    MW: 27378.4 Da    PI: 6.5128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02165-snap-gene-0.31-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-157831799
                                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                                         B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
                                                +pkk+++++g +   s +  l+ ++g +W+vkl  +k++g++++++GW +F++ +gL  g  +vF+++g
  maker-scaffold02165-snap-gene-0.31-mRNA-1  7 LIPKKYIAKYGVD--LSDMAFLMIPNGTTWKVKL--TKCDGEVWFENGWCKFASYHGLTLGHLLVFRYEG 72
                                               59********877..777999999**********..********************************** PP

                                               SSEE..EEEEE-S CS
                                         B3 87 rsefelvvkvfrk 99
                                               +s f  +v +f++
  maker-scaffold02165-snap-gene-0.31-mRNA-1 73 NSHF--YVLIFDA 83
                                               9999..**99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.07184IPR003340B3 DNA binding domain
SMARTSM010192.7E-9384IPR003340B3 DNA binding domain
PfamPF023623.6E-13783IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-20783IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-19884IPR015300DNA-binding pseudobarrel domain
CDDcd100179.05E-16882No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MIFLVTLIPK KYIAKYGVDL SDMAFLMIPN GTTWKVKLTK CDGEVWFENG WCKFASYHGL  60
TLGHLLVFRY EGNSHFYVLI FDATATEIDY PLDDQLQVHR LEDSESDDNS VEIIDGFMPS  120
QKIKEIDGGV GTSTSRRRLK GKAIVNDEEC KALENSQELM TTNGKAENIV RAKAFKSENP  180
LFMVIIHPSY INGKDHNLPH GIINHLPREG FTKDYTKGSI LTVKLQVVDR LWPVKLYIYE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875911.12e-98B3 domain-containing transcription factor VRN1-like
TrEMBLA0A2N9FQS43e-48A0A2N9FQS4_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-31B3 family protein