PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02169-augustus-gene-0.32-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 762aa    MW: 84484 Da    PI: 6.1721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02169-augustus-gene-0.32-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.20.000695816181355
                                                    HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                                    R+ i +++ eLr+l+P+ +      K s  + Le++++++  Lq
  maker-scaffold02169-augustus-gene-0.32-mRNA-1 581 RQLIQDRIKELRDLVPNgS------KCSIDSLLERTIKHMLFLQ 618
                                                    77899************55......6777778888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.4E-366165IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00143562618No hitNo description
PROSITE profilePS5088811.071568617IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-4581627IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-5581635IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 762 aa     Download sequence    Send to blast
MGSYSEKLRT LCLNTGWKYA VFWKFKYRAR VLTWEDAYYH SHHEQHDSLA NNYSSKTQEK  60
LPDGHYSHDP LGLAVAKMSY HVYSLGEGIV GQVAVTGKHQ WIFADKHVTN SCLSYEYCDG  120
WQTQFSAGIR TIVVVSVAPH GVVQLGSINK VNEDMKLVNH IRDVFLTLQD SSIEPIPSPI  180
QCSMKNLLRL QHMSTNSLAS EMIPDGLRNL DKAIDRERPD VWVSMFPYFG KDSDSSYAFP  240
PHDFYQEQAA EVVNNHGGLE LSTSGGDESA KFHLSKSEIV NLEHQKLVGV RAVDDRKCAG  300
ENSGCKDMGV CSESNANSFS HNSATDSVNL HDVIVPSDRV GVDFTYLSSD LLDSAVCDRF  360
KLDGISFYEN GLLQKPESLD MKVHKDLDKL DFQTESSHMD ILNTSLNFPA GCELQEVLGP  420
AFLKKSDYFD WQAEKTEDRT ALAMPEGMSN SQLTSDSHPD HLLEAVVANV CQSGSDIKSE  480
KPFCKPVQSL LTTEVSPEPS SHTVHTITSA AYSFEKSSLV GDDKQHCLSS SGVCGAISPT  540
GFSSNCPSTC SEQLERSSEP AKNNKKRARP GENCRPRPRD RQLIQDRIKE LRDLVPNGSK  600
CSIDSLLERT IKHMLFLQSI TKHADKLNKC ANLKLHNKEP GMVSCSSSEH GSSWAVEVGG  660
HLKVCSIIVE NLNKNGQMLV EMLCEECSHF LEIAEAIRSL GLTILKGVTE AHGEKTWICF  720
VVEVGPEQQK HTQNGYIVVP CSNIATQASN ATVMSGDTWR FS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023871131.10.0transcription factor bHLH155 isoform X1
RefseqXP_023871132.10.0transcription factor bHLH155 isoform X2
TrEMBLA0A2I4F0U00.0A0A2I4F0U0_JUGRE; transcription factor bHLH155-like isoform X1
STRINGXP_010111900.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.30.0conserved peptide upstream open reading frame 7