PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02174-snap-gene-0.23-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 265aa MW: 30028.9 Da PI: 7.5532

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02174-snap-gene-0.23-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	116	133	1	18
EEETTTTEEESSHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkr 18 ++C+ C k+F+r nL+r maker-scaffold02174-snap-gene-0.23-mRNA-1 116 FSCHVCLKTFNRYNNLQR 133 89**************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MKPFEISLSI NPLASSSSSS DHTDTELLNL FLSMDQNSLD PHSSLSNLPS WPTVLMEENP 60 KACSDDHEDV TLALNIGFPN HSSGSIDANT METANIAANN YWTPTLEQIH IGFTHFSCHV 120 CLKTFNRYNN LQRGRFVEGK STTTHVRHSM LYYCAEGCKN NISHSRAKPL KDRDFRTLQT 180 HYKRIHGMKN FECCQCGKLL AMKGDWRTHE KNCGKRWLCV CSSDFKDKKS LKDHIKGFGS 240 GHSPYPPTFE GFDEVLKDTS PFIFV

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023914530.1	1e-143	protein TRANSPARENT TESTA 1-like
Swissprot	Q8VWG3	6e-67	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A2N9EYG1	1e-111	A0A2N9EYG1_FAGSY; Uncharacterized protein
STRING	EOY15971	4e-96	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-60	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]