PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02241-augustus-gene-0.25-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 294aa    MW: 32165.2 Da    PI: 7.5878
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02241-augustus-gene-0.25-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.87e-10754447
                                                   S-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding  4 WTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                                                   W++eE++ + +a++++  +     +W++Ia++++  +t  ++k ++q +
  maker-scaffold02241-augustus-gene-0.25-mRNA-1  7 WSKEEEKTFENAIAMHWVDedckeQWEKIASMVP-SKTMDELKQHYQLL 54
                                                   **********************************.***********965 PP
2Myb_DNA-binding37.27e-12131175347
                                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    +WT++E+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
  maker-scaffold02241-augustus-gene-0.25-mRNA-1 131 PWTEDEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 175
                                                    7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.818158IPR017884SANT domain
SMARTSM007174.1E-5357IPR001005SANT/Myb domain
PfamPF002497.6E-8753IPR001005SANT/Myb domain
CDDcd001673.03E-8755No hitNo description
Gene3DG3DSA:1.10.10.603.2E-5752IPR009057Homeodomain-like
SuperFamilySSF466891.79E-9761IPR009057Homeodomain-like
PROSITE profilePS5129416.282124180IPR017930Myb domain
SuperFamilySSF466892.15E-16126181IPR009057Homeodomain-like
TIGRFAMsTIGR015573.8E-17128178IPR006447Myb domain, plants
SMARTSM007179.6E-10128178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-10129174IPR009057Homeodomain-like
CDDcd001673.42E-9131176No hitNo description
PfamPF002492.4E-10131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MSSGIIWSKE EEKTFENAIA MHWVDEDCKE QWEKIASMVP SKTMDELKQH YQLLVEDVSA  60
IEAGHIPLPN YVGEEASSSN KDCHGFSGAM ASDKRSNCGF GGGFSGLGHD STGHGGKGGS  120
RSEQERRKGI PWTEDEHRLF LLGLDKFGKG DWRSISRNFV ISRTPTQVAS HAQKYFIRLN  180
SMNRDRRRSS IHDITSVNNG DVASHQAPIT GQQTNMNPSS VATIGPPVKH RTQPHMPGLG  240
MYGTSVGHPI AAPPVHMASA VGTPVMLPPG HHPHSHPPYV MPVAYPMAPP PMHQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-14371773RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913108.10.0transcription factor MYBS1
SwissprotQ9FNN64e-82SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2I4F1860.0A0A2I4F186_JUGRE; transcription factor DIVARICATA-like
STRINGPOPTR_0012s05720.11e-162(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106943340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-79MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]