PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02244-snap-gene-0.26-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Protein Properties

Length: 213aa MW: 24215.5 Da PI: 7.505

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02244-snap-gene-0.26-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.4	8.4e-16	129	210	1	88
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeF 68 f+k +++s+v+ +l lp f++eh + e+ ++tl de+ ++ k+ +k++ l++GW++F maker-scaffold02244-snap-gene-0.26-mRNA-1 129 FLKPMLQSHVTGGFWLGLPVYFCKEHLPD--EDEMITLVDEDEDEFPTKYLAEKNG----LSGGWRGF 190 89**********************544..4559***********666666....**** PP HHHHT--TT-EEEEEE-SSS CS B3 69 vkangLkegDfvvFkldgrs 88 + +++L +gD +vF+l++ + maker-scaffold02244-snap-gene-0.26-mRNA-1 191 AIDHELVDGDALVFQLINPT 210 *************98754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-17	123	212	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.94E-21	123	212	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.55E-24	127	213	No hit	No description
Pfam	PF02362	4.4E-14	129	211	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.11	129	213	IPR003340	B3 DNA binding domain
SMART	SM01019	2.9E-17	129	213	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MVELKRSYEE CRRQRLEENK KRMEELNIGK LALALKASST PKSSPAKQVK RPRVSLDVSS 60 VPVRRSSRTA NKPPPNYKEV PIEPLGTLRR SYRRGSLLSR FYASDGARQD AIERAEQLES 120 DLGSDFPTFL KPMLQSHVTG GFWLGLPVYF CKEHLPDEDE MITLVDEDED EFPTKYLAEK 180 NGLSGGWRGF AIDHELVDGD ALVFQLINPT TFK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023912853.1	1e-154	B3 domain-containing protein At3g19184-like
Swissprot	Q1G3M3	1e-75	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A2I4DLT7	1e-110	A0A2I4DLT7_JUGRE; B3 domain-containing protein At3g19184-like
STRING	XP_009772546.1	1e-101	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-64	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]