PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02280-augustus-gene-0.9-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family G2-like
Protein Properties Length: 374aa    MW: 42100.6 Da    PI: 7.8972
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02280-augustus-gene-0.9-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.7e-32195248255
                                       G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                                   pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  maker-scaffold02280-augustus-gene-0.9-mRNA-1 195 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 248
                                                   9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-15192248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-28193248IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-23195248IPR006447Myb domain, plants
PfamPF002492.4E-7196247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNNK PTSSWRRGTE EEVDLGFWKR AFDSRNSMSS MAKPDTCFEL  60
SLSNPRPSDH HSSLTNHNHH LQNGNGNLFH TFQQQNHYSH HQNQHQHQLH HQPLFQQPTQ  120
GLSPELGFLR PIRGIPVYQN PPPFPFAQQP LDVSHQPSSI TIPNTTSSSS PFQSQGLLRS  180
RFLSRFPAKR SMRAPRMRWT TTLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK  240
SHLQMYRTVK TTDRAAASSG QSDVFENGSS GDTSEDLMFE IQNPRRPELS IQQGRPTAQD  300
KDYQGLWSNS SSREAWLHGK PRDSCGNIPS LEKDMDPKCL SYERISDVSS SNNHSGASPK  360
KPNLDEGGAG DENQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023898660.10.0probable transcription factor KAN2 isoform X1
TrEMBLA0A2I4H7W40.0A0A2I4H7W4_JUGRE; probable transcription factor KAN2 isoform X2
STRINGVIT_02s0012g01940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-70G2-like family protein