PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02360-snap-gene-0.37-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 164aa    MW: 17988.6 Da    PI: 8.2106
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02360-snap-gene-0.37-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.000294794254
                                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                                               r ++    + R +++ +++  L++l+ +      +K + a++L  A+eYI+ L
  maker-scaffold02360-snap-gene-0.37-mRNA-1 47 RHKADLSAKERKEKLGERIVSLQQLVSPF-----GKTDTASVLCDAMEYINFL 94
                                               6666667789999999**********998.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.4684594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1245110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-845105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.44E-64599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MIVSSSFCNA DSQFSGEEEI EVGKMMEHKR SPCSVEQSGL TSLASKRHKA DLSAKERKEK  60
LGERIVSLQQ LVSPFGKTDT ASVLCDAMEY INFLHDQVKV LSAPYLQSNP SKMQELGPYS  120
LRSRGLCLVP VSCTAGVARS NGADIWAPIK TTSPKFEKAI SQFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4576610.0AF457661.2 Castanea dentata clone ACS10A vascular protein gene, promoter region.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875345.11e-118transcription factor bHLH153
SwissprotQ7XJU22e-57BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A2I4G9529e-91A0A2I4G952_JUGRE; transcription factor bHLH113-like isoform X1
STRINGXP_008222500.11e-90(Prunus mume)
STRINGEMJ248041e-90(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108133138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.58e-60bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]