PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02381-snap-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 292aa    MW: 32348.3 Da    PI: 4.6641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02381-snap-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.2e-13214259655
                                                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                +++Er RR ri +++ +L+el+P+     +k  + a++Le+AveY+k Lq
  maker-scaffold02381-snap-gene-0.26-mRNA-1 214 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKLLQ 259
                                                689*********************7....688***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.615208258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16211274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.35E-11212263No hitNo description
Gene3DG3DSA:4.10.280.101.8E-16213274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10214259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-12214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MQPTPDGRSN SGGGGSGELS GGGGLARFRS APATWLEALL EEEKPVAQKE EREGNVEEEG  60
EEEEEEDEDE EDPLEPTQSL TQLLASSADP SLLVFDSNIF RQNSSPAEFF GNTDSEAYFS  120
NFGLNPNPPN YNNYDSHSNS NTIHGGGGTG TKRSRELNHH FTAKFPSHHH LKGEQSSGGG  180
GVGSFIDMEM EKILEDSVPC RVRAKRGCAT HPRSIAERVR RTRISDRIRK LQELVPNMDK  240
QTNTADMLEE AVEYVKLLQK QIQDLSEQQQ RCKCVVKDFT EESIKDSSHS HV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023889026.11e-156transcription factor bHLH80-like isoform X2
SwissprotQ9C8P82e-68BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A2I4HJU91e-86A0A2I4HJU9_JUGRE; transcription factor bHLH80-like isoform X2
STRINGGorai.013G138300.12e-79(Gossypium raimondii)
STRINGXP_004168264.12e-79(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.13e-52bHLH family protein