PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02428-augustus-gene-0.19-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

LBD

Protein Properties

Length: 165aa MW: 18371 Da PI: 6.7686

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02428-augustus-gene-0.19-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	144.6	2.9e-45	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvye 64 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvye maker-scaffold02428-augustus-gene-0.19-mRNA-1 6 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYE 69 7************************************************************* PP DUF260 65 AearardPvyGavgvilklqqqleqlkaelallkee 100 A+arardPvyG+vg i+ lq+q++ql+ +la++++e maker-scaffold02428-augustus-gene-0.19-mRNA-1 70 ANARARDPVYGCVGAISFLQNQVSQLQMQLAVAQAE 105 ******************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.927	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-44	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MGGNSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK VFGASNVSKM LQELPVHQRA 60 DAVSSLVYEA NARARDPVYG CVGAISFLQN QVSQLQMQLA VAQAEILCIQ MQQEPVMPTP 120 QMDPDDKSSY LFHDSLPQYL NFSSSSNVIH DSFKRESIFG HDMVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-48	2	107	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-48	2	107	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023915143.1	1e-119	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	9e-75	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A2N9GRE8	1e-108	A0A2N9GRE8_FAGSY; Uncharacterized protein
STRING	cassava4.1_031673m	1e-106	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1664	34	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-77	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]