PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02471-augustus-gene-0.27-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 206aa    MW: 22745.1 Da    PI: 8.6443
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02471-augustus-gene-0.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP73.53.6e-2372119148
                                                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
                                            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                                                    +Cq+e+C adl++ak+yhrrhkvCe hska+vv+v+g++qrfCqqCsr
  maker-scaffold02471-augustus-gene-0.27-mRNA-1  72 CCQAEKCGADLTDAKRYHRRHKVCELHSKASVVIVAGQRQRFCQQCSR 119
                                                    6**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-2466119IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.03370148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-2271121IPR004333Transcription factor, SBP-box
PfamPF031102.9E-1773119IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MEARSFEGKR TFKEKVYKDA IVEEDVDDDL DEEEGGGGEM MSFADNERKR AVAVCSGKRG  60
TSGGAGGVSP PCCQAEKCGA DLTDAKRYHR RHKVCELHSK ASVVIVAGQR QRFCQQCSRS  120
RISKPSFSIV FDSCFFSIVT WNVIPSITST TSLASKSKCS MIYQSLMKLK EAAAYAWLDT  180
MSAAERLVAS QRKLRVGKLM IIVAEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A1e-1869122255squamosa promoter-binding protein-like 12
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023921416.12e-58squamosa promoter-binding protein 1-like
TrEMBLA0A2I4H3R17e-47A0A2I4H3R1_JUGRE; squamosa promoter-binding-like protein 3
STRINGXP_009340759.16e-38(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.29e-15squamosa promoter binding protein-like 8