PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02514-snap-gene-0.25-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 486aa    MW: 53735.9 Da    PI: 6.7868
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02514-snap-gene-0.25-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52.1e-1560104147
                                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                r rW++eE+++++da k++G   W++I +++g ++ + q++s+ qk+
  maker-scaffold02514-snap-gene-0.25-mRNA-1  60 RERWSEEEHKKFLDALKLYGRA-WRRIEEHVG-TKNAVQIRSHAQKF 104
                                                78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.92E-1554108IPR009057Homeodomain-like
PROSITE profilePS5129419.99255109IPR017930Myb domain
TIGRFAMsTIGR015573.8E-1558107IPR006447Myb domain, plants
SMARTSM007177.3E-1259107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-860100IPR009057Homeodomain-like
PfamPF002492.5E-1260103IPR001005SANT/Myb domain
CDDcd001674.10E-962105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MAIQDQSVGS RSHSVVQASN GISLSSGLHS VTGVQLRDQF SCGNDYAPKV RKPYTITKQR  60
ERWSEEEHKK FLDALKLYGR AWRRIEEHVG TKNAVQIRSH AQKFFSKVAR DSNCSNTTST  120
EPIEIPPPRP KRKPMHPYPR KLVIPPNKEV SALEQPIRST SPNSSVWEQE DQSPTSVLSA  180
IGSDTVGFTD SDSPNGSLSP ASSTAGVQPE GLVLSEPNQS TEESASPSPA LKTVGSKFEL  240
FPRENNYVKE GASEETSNRS LKLFGRTVLV TDSHRPSSPT IVAGKSMPAD ILEEKVVQPL  300
PWNFVPLKST QGNTEYSWSP STQGGLYFMQ CQKENSYMAE ANSAAPIPWW TFYGGLRFPV  360
MPFHEVEQSK AYLGSDLEEI QGKEVQKEGS WTGSNNGSVD DGNNGDKCSD AETQSCPLFL  420
KEENQEAGLV FQLRPSENSA FSELGRSPGK CLKGFVPYKR CVAERHTQSS TIRGEEREEK  480
QIRLCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872232.10.0protein REVEILLE 1
TrEMBLA0A2N9GSA30.0A0A2N9GSA3_FAGSY; Uncharacterized protein
STRINGVIT_04s0079g00410.t011e-178(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.18e-67MYB_related family protein