PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02524-snap-gene-0.28-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 257aa    MW: 27679.1 Da    PI: 7.8711
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02524-snap-gene-0.28-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31260259
                                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                                       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                                               +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  maker-scaffold02524-snap-gene-0.28-mRNA-1  2 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDMSILITTYEGNHNHP 60
                                               8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.208162IPR003657WRKY domain
SMARTSM007745.4E-38161IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.4E-31260IPR003657WRKY domain
SuperFamilySSF1182909.29E-27261IPR003657WRKY domain
PfamPF031061.5E-27360IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MSDGCQWRKY GQKMAKGNPC PRAYYRCTMA TGCPVRKQVQ RCAEDMSILI TTYEGNHNHP  60
LSPAATAMAS STSAAVNMLL SGSTTTTTSN NGSHNYNPSN PSLFPSMLPN HAISPTMATL  120
STSSPYPTIT LDLTHTTHHP MQRPPNFSLP SPPSFFPLPL HNGVPQQQQL TGHHHHPLHM  180
SSNKLPTTLV DKVTAAIATD RNFTTALMAA VSSIMDATQN NNNTSNISGQ DTCSEEMAVV  240
PVSPQLPDQS CTTFASN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-191641476WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4561252e-31AM456125.1 Vitis vinifera contig VV78X148510.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023884542.11e-163probable WRKY transcription factor 47
SwissprotQ9XEC34e-58WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A2N9EIM07e-99A0A2N9EIM0_FAGSY; Uncharacterized protein
STRINGEOX954656e-79(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-48WRKY family protein