PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02563-augustus-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 431aa    MW: 46416.3 Da    PI: 5.8173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02563-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10273321355
                                                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                     +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  maker-scaffold02563-augustus-gene-0.16-mRNA-1 273 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 321
                                                    58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-17268337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.54E-11268325No hitNo description
PROSITE profilePS5088815.485270320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16271338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7273321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10276326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MDGHENEDVG FQHGSEGILN CPSSRMSTNP LPEKVSAMTM SSVSMYKPSN GADPFFGSGW  60
DPLVSLSQSE NFGGSSMVSH GEYPPYPVVM ENQGISTTSH LVQYPSSSSF VELVPKLPCF  120
GSGSFSEMVN SFGLPDCSQI ANSGCPQNYA SNKEVATGRT STNGAQSKDD QQVSGEGAIG  180
SSPNAKRRKR VPDSNNSAFS PNQNGEGDVQ KDLSGDSSDG QKEPDEKKPK IEQNTGSNMR  240
GKQTSKQAKD TSSGDAPKDN YIHVRARRGQ ATNSHSLAER VRREKISERM RLLQELVPGC  300
NKITGKAVML DEIINYVQSL QQQVEFLSMK LATVNPELNI DIEQILSKDI IHSRGGTGAI  360
LGFGPGMSSS HPYPHGIYQG TLPSIPSTTP KYPSLSQNVL DNDFQSLFQM GFDSSSAIDN  420
LGPNGHLKPE N
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872654.10.0transcription factor bHLH74
TrEMBLA0A2N9F2F50.0A0A2N9F2F5_FAGSY; Uncharacterized protein
STRINGXP_008220406.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.16e-84bHLH family protein