PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02580-snap-gene-0.30-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 219aa    MW: 25962.2 Da    PI: 8.6993
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02580-snap-gene-0.30-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.95.1e-1641127290
                                       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 
                                                 Yn+YA+++ Fs+rk k ++ + +++i +++f Cskeg++ +e+   e+++ ++ etrtg k  +  +
  maker-scaffold02580-snap-gene-0.30-mRNA-1  41 LYNNYASRTCFSIRKGKPRYINGTKNIRQHEFLCSKEGFKIDEDPY-EEKNWKKLETRTGYKVFICFT 107
                                                7*****************************************9999.99999**************** PP

                                       FAR1  70 kekdgkwevtkleleHnHela 90 
                                                 e +++ +vt ++ +HnH+la
  maker-scaffold02580-snap-gene-0.30-mRNA-1 108 FE-NNVRRVTAFNPKHNHKLA 127
                                                *9.999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-1341127IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
ICNLSDIGGI EEDCLFIERL ENNDENLLDK VTDSEDEAYN LYNNYASRTC FSIRKGKPRY  60
INGTKNIRQH EFLCSKEGFK IDEDPYEEKN WKKLETRTGY KVFICFTFEN NVRRVTAFNP  120
KHNHKLALPS ERHLLKSGRH ISKPKAELEF QNTWDKMMHK FNLEDHHWLN MMYKIQHKWS  180
TAFTKDSFTT EFKASSRSEN TNHVLNNIAN TTRRPTKSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873391.17e-73protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9ET885e-57A0A2N9ET88_FAGSY; Uncharacterized protein
STRINGXP_008229713.11e-37(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-11FAR1-related sequence 5