PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02701-augustus-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 86aa    MW: 9970.53 Da    PI: 10.9683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02701-augustus-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP221.65.3e-0752802152
                                            AP2 21 dpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                                                    p  ng rkr +lg+f+ta + a a+++a + 
  maker-scaffold02701-augustus-gene-0.23-mRNA-1 52 KP--NG-RKRLWLGTFDTAVDDASAYDEATRT 80
                                                   33..55.7********************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.873986IPR001471AP2/ERF domain
SMARTSM003800.00294085IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-55082IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-115086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MDNPDEKRRK RKTREDSIAE TLAKWKNTML PNLSLMLLLK FRPKGQRKGI RKPNGRKRLW  60
LGTFDTAVDD ASAYDEATRT MYVASA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916298.11e-19dehydration-responsive element-binding protein 2A-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-09DRE-binding protein 2A