PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02784-augustus-gene-0.30-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

NAC

Protein Properties

Length: 192aa MW: 22024.9 Da PI: 4.6894

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02784-augustus-gene-0.30-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	133	2.1e-41	13	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdL+ k+ ae ++wyf+s+r maker-scaffold02784-augustus-gene-0.30-mRNA-1 13 LPPGFRFCPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPYDPWDLDGKALAEGNKWYFYSRR 75 79***********************999.99**********977778899**98 PP NAM 65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +nr+t +gyWka g++++v++++++ vg+kk+Lvfy+g+ap+g kt+W+m+eyrl maker-scaffold02784-augustus-gene-0.30-mRNA-1 76 T--------QNRVTCNGYWKAMGNEEPVMNSSSKCVGMKKILVFYTGEAPSGIKTSWIMQEYRL 131 4........58*************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.29E-50	9	162	IPR003441	NAC domain
PROSITE profile	PS51005	47.143	13	163	IPR003441	NAC domain
Pfam	PF02365	3.5E-24	14	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MLYKIMGDNN VNLPPGFRFC PTDEELVVHF LHRKASLLPC HPDVIPDLDL YPYDPWDLDG 60 KALAEGNKWY FYSRRTQNRV TCNGYWKAMG NEEPVMNSSS KCVGMKKILV FYTGEAPSGI 120 KTSWIMQEYR LSDSAGSTSR SSKRRGNPKI DYSTWVICRV YERDEDDDGT ELSCLDEVFL 180 SLDDLDEISL PI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-42	9	164	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-42	9	164	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-42	9	164	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-42	9	164	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-42	9	164	16	169	NAC domain-containing protein 19
3swm_B	4e-42	9	164	16	169	NAC domain-containing protein 19
3swm_C	4e-42	9	164	16	169	NAC domain-containing protein 19
3swm_D	4e-42	9	164	16	169	NAC domain-containing protein 19
3swp_A	4e-42	9	164	16	169	NAC domain-containing protein 19
3swp_B	4e-42	9	164	16	169	NAC domain-containing protein 19
3swp_C	4e-42	9	164	16	169	NAC domain-containing protein 19
3swp_D	4e-42	9	164	16	169	NAC domain-containing protein 19
4dul_A	4e-42	9	164	13	166	NAC domain-containing protein 19
4dul_B	4e-42	9	164	13	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023879962.1	1e-135	NAC domain-containing protein 104-like isoform X1
Swissprot	Q8GWK6	3e-83	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2I4GDM6	1e-103	A0A2I4GDM6_JUGRE; NAC domain-containing protein 104 isoform X1
STRING	VIT_12s0055g00510.t01	1e-97	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-74	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]