PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02806-augustus-gene-0.22-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ERF
Protein Properties Length: 147aa    MW: 16417 Da    PI: 11.1359
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02806-augustus-gene-0.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.13.5e-212272256
                                            AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                                   +y+GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa a+++a+++l+g+
  maker-scaffold02806-augustus-gene-0.22-mRNA-1 22 HYRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAALAYDEAALRLRGP 72
                                                   7********.**********883....5**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.13E-312178No hitNo description
PROSITE profilePS5103222.8792279IPR001471AP2/ERF domain
SMARTSM003803.1E-362285IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-222279IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-312278IPR001471AP2/ERF domain
PfamPF008471.8E-142271IPR001471AP2/ERF domain
PRINTSPR003671.2E-102334IPR001471AP2/ERF domain
PRINTSPR003671.2E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MSMNGSVHAS ATTRPPPKQQ AHYRGVRKRP WGRFAAEIRD PWKKTRKWLG TFDTAEEAAL  60
AYDEAALRLR GPKAKTNFGF ILPPPPSPAP PPPPPPPPPP VRSEYRGYKM ENLAVMTTPQ  120
SHTQTTLSPS PKKRPFLFDL NLPAPLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-232278562ATERF1
3gcc_A3e-232278562ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924196.11e-67ethylene-responsive transcription factor ERF112-like
TrEMBLA0A2N9I8P63e-52A0A2N9I8P6_FAGSY; Uncharacterized protein
STRINGEMJ004483e-51(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-22ERF domain protein 12