PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02824-augustus-gene-0.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NAC
Protein Properties Length: 285aa    MW: 33027.6 Da    PI: 8.7521
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02824-augustus-gene-0.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.61.4e-5491341128
                                            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskr 64 
                                                    lppGfrFhPtdeel+ +yL++++++k++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfF++r
  maker-scaffold02824-augustus-gene-0.20-mRNA-1   9 LPPGFRFHPTDEELIIYYLRNQATSKPCPV-SIIPEVDIYKFDPWQLPEKAEFGENEWYFFTPR 71 
                                                    79****************************.89***************99999*********** PP

                                            NAM  65 dkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                                    d+ky++g r+nrat sgyWkatg+dk+++s + + vg+kk Lvfykgr pkg ktdW+mheyrl
  maker-scaffold02824-augustus-gene-0.20-mRNA-1  72 DRKYPNGVRPNRATVSGYWKATGTDKAIYS-GAKYVGVKKALVFYKGRPPKGIKTDWIMHEYRL 134
                                                    ******************************.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-665161IPR003441NAC domain
PROSITE profilePS5100561.4399161IPR003441NAC domain
PfamPF023654.9E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEGRARSDLP PGFRFHPTDE ELIIYYLRNQ ATSKPCPVSI IPEVDIYKFD PWQLPEKAEF  60
GENEWYFFTP RDRKYPNGVR PNRATVSGYW KATGTDKAIY SGAKYVGVKK ALVFYKGRPP  120
KGIKTDWIMH EYRLTDSRKQ PKKLLGSMRL DDWVLCRIYK KRHMAKVLDP KVEESLPAPI  180
DVTLPNDAID PNVSKFPRPC SLTHLLDLEY LGPISQLLCD NSHNSNFDFQ NFIGNTGTDN  240
AERPQQGEIQ YQQYLDSGKF QLNQASIFSQ PMFLNPVYDM RGYER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-69816616170NO APICAL MERISTEM PROTEIN
1ut4_B2e-69816616170NO APICAL MERISTEM PROTEIN
1ut7_A2e-69816616170NO APICAL MERISTEM PROTEIN
1ut7_B2e-69816616170NO APICAL MERISTEM PROTEIN
3swm_A2e-69916620173NAC domain-containing protein 19
3swm_B2e-69916620173NAC domain-containing protein 19
3swm_C2e-69916620173NAC domain-containing protein 19
3swm_D2e-69916620173NAC domain-containing protein 19
3swp_A2e-69916620173NAC domain-containing protein 19
3swp_B2e-69916620173NAC domain-containing protein 19
3swp_C2e-69916620173NAC domain-containing protein 19
3swp_D2e-69916620173NAC domain-containing protein 19
4dul_A2e-69816616170NAC domain-containing protein 19
4dul_B2e-69816616170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023893610.10.0NAC transcription factor 29
SwissprotK4BWV21e-124NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A2N9J3130.0A0A2N9J313_FAGSY; Uncharacterized protein
STRINGEOY018691e-148(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-115NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]