PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02828-augustus-gene-0.10-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

YABBY

Protein Properties

Length: 188aa MW: 21002.8 Da PI: 8.2277

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02828-augustus-gene-0.10-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	215.7	1.4e-66	6	161	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldesl 67 + ++eq+Cy+ CnfCn +lavsvP +sl+ +vtvrCGhCt+l svn+a a q l+ ++ + maker-scaffold02828-augustus-gene-0.10-mRNA-1 6 DVAPEQLCYIPCNFCNIVLAVSVPCSSLLDIVTVRCGHCTNLWSVNMAAAFQSLSWQDA---QA 66 5689********************************************999999986...55 PP YABBY 68 keelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynr 131 ++++ +++++ ++ +s + +++ a++ +++n +ee v+rPPekrqrvPsayn+ maker-scaffold02828-augustus-gene-0.10-mRNA-1 67 PHPITPDHRNDYSSSSSSKCNSKIAMRA----PITNNATEERV----VNRPPEKRQRVPSAYNQ 122 5567776666655555544444444433....34455555544....89*********** PP YABBY 132 fikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl maker-scaffold02828-augustus-gene-0.10-mRNA-1 123 FIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 ***********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.0E-70	8	161	IPR006780	YABBY protein
SuperFamily	SSF47095	4.19E-8	104	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.4E-4	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSSCIDVAPE QLCYIPCNFC NIVLAVSVPC SSLLDIVTVR CGHCTNLWSV NMAAAFQSLS 60 WQDAQAPHPI TPDHRNDYSS SSSSKCNSKI AMRAPITNNA TEERVVNRPP EKRQRVPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLETNNQAK LDKASEKHLT 180 SRAALLNN

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090216	2e-77	BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023893593.1	1e-136	axial regulator YABBY 5
Swissprot	Q8GW46	3e-85	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2N9IX36	1e-115	A0A2N9IX36_FAGSY; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	1e-114	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-85	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]