PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02883-augustus-gene-0.26-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 309aa    MW: 33784.2 Da    PI: 4.4223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02883-augustus-gene-0.26-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-05282305123
                                                    EEETTTTEEESSHHHHHHHHHH.T CS
                                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                                                    ++C+ C++sF++   L++H +  H
  maker-scaffold02883-augustus-gene-0.26-mRNA-1 282 FPCSLCNRSFNSEIGLQSHTKAkH 305
                                                    89*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.76E-5277304No hitNo description
SMARTSM003550.0018282305IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.531282309IPR007087Zinc finger, C2H2
PfamPF128748.7E-5284304No hitNo description
PROSITE patternPS000280284305IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEFWGAEVKS GEPFEVYPGD GFILHLSQAC LGEVKKNIGN ESVCLFVKVD KQKLVLGTLS  60
SENFPQLSFD LVFEKKFELS HNWKNGTGLI TWFFLLLYVI SLTDICIVIT GEVSDSEEDF  120
PVVTHNSGKY ESQAKPAAKP DGTAAKRVKI VEPNKDEDMD EDDVDKDASS NDDSSDEDDV  180
NEAKAKVNGE EEFSEDDDSS DDEDSSEDED EETPMKANAS KKRPLESAQK TPVPDKKAKL  240
VTPENTEFIA ADGKKGGGHV ATPHPSKKAA TKQQTPKSGG AFPCSLCNRS FNSEIGLQSH  300
TKAKHSDGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023928367.11e-149histone deacetylase HDT1-like
TrEMBLA0A2N9HQ401e-132A0A2N9HQ40_FAGSY; Uncharacterized protein
STRINGXP_008442794.11e-85(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.26e-29histone deacetylase 3