PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02926-augustus-gene-0.23-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 223aa    MW: 25558.4 Da    PI: 9.8671
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02926-augustus-gene-0.23-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.36.4e-1986138254
                                                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                                    rk+ +++keq   Le+ F+ +++++ ++++ L+++l+L+ rqV vWFqNrRa+
  maker-scaffold02926-augustus-gene-0.23-mRNA-1  86 RKKLRLSKEQASLLEDSFKIHSTLTPAQKQALSQQLNLKPRQVEVWFQNRRAR 138
                                                    678899**********************************************9 PP
2HD-ZIP_I/II108.45.2e-3586181190
                                    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR.......tktk 57 
                                                    +kk+rlskeq++lLE+sF+ +++L+p +K++l+++L+l+prqv+vWFqnrRAR       tk+k
  maker-scaffold02926-augustus-gene-0.23-mRNA-1  86 RKKLRLSKEQASLLEDSFKIHSTLTPAQKQALSQQLNLKPRQVEVWFQNRRARkinsccrTKLK 149
                                                    69*************************************************9644444448*** PP

                                    HD-ZIP_I/II  58 qlEkdyeaLkraydalkeenerLekeveeLree 90 
                                                    q+E+d+e+Lk+++++l+een+rL+ke +eLr +
  maker-scaffold02926-augustus-gene-0.23-mRNA-1 150 QTEVDCEFLKKCCESLSEENKRLKKELQELR-S 181
                                                    ******************************9.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.04E-1771138IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-1872136IPR009057Homeodomain-like
PROSITE profilePS5007116.32582142IPR001356Homeobox domain
SMARTSM003899.4E-1784146IPR001356Homeobox domain
CDDcd000861.59E-1486138No hitNo description
PfamPF000465.2E-1686138IPR001356Homeobox domain
SMARTSM003401.8E-21149192IPR003106Leucine zipper, homeobox-associated
PfamPF021837.6E-10149182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEDDEACNTK LRLGLGLDDY VPRKKRHDEK AKPVVSLDLA FALRPKQEAM NVDHKADRPS  60
FKKMERDHEY PSKENGSINN KKDGGRKKLR LSKEQASLLE DSFKIHSTLT PAQKQALSQQ  120
LNLKPRQVEV WFQNRRARKI NSCCRTKLKQ TEVDCEFLKK CCESLSEENK RLKKELQELR  180
SLKVGPSPLY IQIQKAATLA MCTSCEKGIK ANEVKGNEAV FDV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885509.11e-150homeobox-leucine zipper protein HAT14-like
SwissprotQ0JB929e-51HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBLA0A2N9EV411e-123A0A2N9EV41_FAGSY; Uncharacterized protein
STRINGXP_009342828.12e-76(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-52HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]