PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02926-augustus-gene-0.23-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 216aa    MW: 24753.5 Da    PI: 9.8699
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02926-augustus-gene-0.23-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1986140256
                                                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                       Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                    rk+ +++keq   Le+ F+ +++++ ++++ L+++l+L+ rqV vWFqNrRa+ k
  maker-scaffold02926-augustus-gene-0.23-mRNA-2  86 RKKLRLSKEQASLLEDSFKIHSTLTPAQKQALSQQLNLKPRQVEVWFQNRRARTK 140
                                                    678899***********************************************98 PP
2HD-ZIP_I/II120.86.9e-3986174190
                                    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdye 64 
                                                    +kk+rlskeq++lLE+sF+ +++L+p +K++l+++L+l+prqv+vWFqnrRARtk+kq+E+d+e
  maker-scaffold02926-augustus-gene-0.23-mRNA-2  86 RKKLRLSKEQASLLEDSFKIHSTLTPAQKQALSQQLNLKPRQVEVWFQNRRARTKLKQTEVDCE 149
                                                    69************************************************************** PP

                                    HD-ZIP_I/II  65 aLkraydalkeenerLekeveeLree 90 
                                                    +Lk+++++l+een+rL+ke +eLr +
  maker-scaffold02926-augustus-gene-0.23-mRNA-2 150 FLKKCCESLSEENKRLKKELQELR-S 174
                                                    ***********************9.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-1867140IPR009057Homeodomain-like
SuperFamilySSF466891.58E-1871143IPR009057Homeodomain-like
PROSITE profilePS5007117.00682142IPR001356Homeobox domain
SMARTSM003893.1E-1784146IPR001356Homeobox domain
CDDcd000864.39E-1586143No hitNo description
PfamPF000461.7E-1686140IPR001356Homeobox domain
PROSITE patternPS000270117140IPR017970Homeobox, conserved site
SMARTSM003401.8E-21142185IPR003106Leucine zipper, homeobox-associated
PfamPF021837.3E-10142175IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEDDEACNTK LRLGLGLDDY VPRKKRHDEK AKPVVSLDLA FALRPKQEAM NVDHKADRPS  60
FKKMERDHEY PSKENGSINN KKDGGRKKLR LSKEQASLLE DSFKIHSTLT PAQKQALSQQ  120
LNLKPRQVEV WFQNRRARTK LKQTEVDCEF LKKCCESLSE ENKRLKKELQ ELRSLKVGPS  180
PLYIQIQKAA TLAMCTSCEK GIKANEVKGN EAVFDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885509.11e-154homeobox-leucine zipper protein HAT14-like
SwissprotQ0JB928e-54HOX17_ORYSJ; Homeobox-leucine zipper protein HOX17
TrEMBLA0A2N9EV411e-126A0A2N9EV41_FAGSY; Uncharacterized protein
STRINGXP_009342828.11e-79(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-55HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]